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sw_12_scaffold_20

Search features with annotation key words

Displaying items 1-30 of 71 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_20_1
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3..380
-----------------
DNA (378bp)
protein (126aa)
ATP-grasp protein-like protein n=1 Tax=Natronorubrum tibetense GA33 RepID=L9VJZ5_9EURY
ATP-grasp protein-like protein {ECO:0000313|EMBL:ELY37454.1}; TaxID=1114856 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum tibetense
ATP-grasp protein-like protein
sw_12_scaffold_20_2
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

391..1047
-----------------
DNA (657bp)
protein (219aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MWE3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA49916.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_12_scaffold_20_3
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1120..1809
-----------------
DNA (690bp)
protein (230aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
pimT1; protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MTH6_HALMO
sw_12_scaffold_20_4
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1998..2738
-----------------
DNA (741bp)
protein (247aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CUB7_9EURY
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:ELZ26821.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" sou
protein-L-isoaspartate O-methyltransferase
sw_12_scaffold_20_trna_1
unknown

Not on your lists

2914..2986
-----------------
DNA (73bp)
transferRNA
sw_12_scaffold_20_5
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3012..3599
-----------------
DNA (588bp)
protein (196aa)
Putative uncharacterized protein n=2 Tax=Haladaptatus paucihalophilus RepID=E7QTR2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW91991.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
Protein of unknown function (DUF3257)
sw_12_scaffold_20_6
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3669..3899
-----------------
DNA (231bp)
protein (77aa)
DNA-directed RNA polymerase subunit H {ECO:0000256|HAMAP-Rule:MF_00025}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00025};; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit H n=1 Tax=Halobacterium sp. DL1 RepID=G4IAE4_9EURY
RNA polymerase Rpb5
sw_12_scaffold_20_7
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3896..5461
-----------------
DNA (1566bp)
protein (522aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:ELZ50928.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELZ50928.1};; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacace
DNA-directed RNA polymerase subunit B n=4 Tax=Halorubrum RepID=M0D7L7_9EURY
DNA-directed RNA polymerase subunit beta''
sw_12_scaffold_20_8
Halococcus sp. 197A, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5567..7393
-----------------
DNA (1827bp)
protein (609aa)
rpoB; DNA-directed RNA polymerase subunit B' (EC:2.7.7.6); K03044 DNA-directed RNA polymerase subunit B' [EC:2.7.7.6] id=24646171 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU000431}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU000431};; TaxID=1197130 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
DNA-directed RNA polymerase subunit B' (EC:2.7.7.6)
sw_12_scaffold_20_9
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7442..10399
-----------------
DNA (2958bp)
protein (986aa)
DNA-directed RNA polymerase, subunit a' (EC:2.7.7.6); K03041 DNA-directed RNA polymerase subunit A' [EC:2.7.7.6] id=24616456 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
DNA-directed RNA polymerase {ECO:0000256|RuleBase:RU004279}; EC=2.7.7.6 {ECO:0000256|RuleBase:RU004279};; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
DNA-directed RNA polymerase subunit A'
sw_12_scaffold_20_10
Haloarcula hispanica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10392..11630
-----------------
DNA (1239bp)
protein (413aa)
rpoA''; DNA-directed RNA polymerase subunit A'' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit A'' {ECO:0000256|HAMAP-Rule:MF_00411}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00411};; TaxID=634497 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; H
DNA-directed RNA polymerase subunit A'' n=2 Tax=Haloarcula hispanica RepID=G0HSR2_HALHT
sw_12_scaffold_20_11
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11645..12115
-----------------
DNA (471bp)
protein (157aa)
Transcription elongation factor NusA-like protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MVX7_9EURY
Probable transcription termination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source=
NusA family KH domain protein
sw_12_scaffold_20_12
Halobacterium salinarum, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


12210..12638
-----------------
DNA (429bp)
protein (143aa)
30S ribosomal protein S12 n=2 Tax=Halobacterium salinarum RepID=RS12_HALS3
rps12P; 30S ribosomal protein S12
30S ribosomal protein S12 {ECO:0000255|HAMAP-Rule:MF_00403}; HmaS12; TaxID=478009 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacteri
sw_12_scaffold_20_13
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


12642..13256
-----------------
DNA (615bp)
protein (205aa)
30S ribosomal protein S7 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCA1_9EURY
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480, ECO:0000256|RuleBase:RU003621}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
30S ribosomal protein S7P
sw_12_scaffold_20_14
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13454..14206)
-----------------
DNA (753bp)
protein (251aa)
hypothetical protein n=1 Tax=Halococcus hamelinensis RepID=UPI000299E93E
Uncharacterized protein {ECO:0000313|EMBL:EMA43375.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_12_scaffold_20_15
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14875..17061
-----------------
DNA (2187bp)
protein (729aa)
Elongation factor 2 n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0CND8_9EURY
Elongation factor 2 {ECO:0000256|HAMAP-Rule:MF_00054, ECO:0000256|SAAS:SAAS00088569}; Short=EF-2 {ECO:0000256|HAMAP-Rule:MF_00054};; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natria
translation elongation factor aEF-2
sw_12_scaffold_20_16
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17267..17650)
-----------------
DNA (384bp)
protein (128aa)
HTH DNA binding domain family protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZBC8_9EURY
HTH DNA binding domain family protein {ECO:0000313|EMBL:ELY82912.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 1
HTH DNA binding domain family protein
sw_12_scaffold_20_17
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17689..17883)
-----------------
DNA (195bp)
protein (65aa)
HTH DNA binding domain family protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZBC8_9EURY
HTH DNA binding domain family protein {ECO:0000313|EMBL:ELY82912.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 1
HTH DNA binding domain family protein
sw_12_scaffold_20_18
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17928..18404)
-----------------
DNA (477bp)
protein (159aa)
Putative cyclase n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZA91_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AHG02021.1}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii XH-48.
sw_12_scaffold_20_19
Thermococcus sp. 4557, Thermococcus, Thermococcales, Thermococci, Euryarchaeota, Archaea

Not on your lists

18533..19192
-----------------
DNA (660bp)
protein (220aa)
Uncharacterized protein n=1 Tax=Thermococcus sp. (strain CGMCC 1.5172 / 4557) RepID=G0HMQ3_THES4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEK72490.1}; TaxID=1042877 species="Archaea; Euryarchaeota; Thermococci; Thermococcales; Thermococcaceae; Thermococcus.;" source="Thermococcus sp. (strain CGM
sw_12_scaffold_20_20
unknown

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comp(19289..19567)
-----------------
DNA (279bp)
protein (93aa)

This feature has no annotations

sw_12_scaffold_20_21
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20076..20972)
-----------------
DNA (897bp)
protein (299aa)
Sec-independent protein translocase component TatC 1 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MD81_9EURY
Sec-independent protein translocase protein TatC {ECO:0000256|HAMAP-Rule:MF_00902}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source
tatC; twin-arginine translocation protein TatC
sw_12_scaffold_20_22
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21272..23716
-----------------
DNA (2445bp)
protein (815aa)
Twin arginine translocation system subunit TatC n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XZE0_NATM8
tatC2; twin arginine translocation system subunit TatC
Sec-independent protein translocase subunit TatC {ECO:0000313|EMBL:CCQ35531.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="N
sw_12_scaffold_20_23
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23773..24027
-----------------
DNA (255bp)
protein (85aa)
Putative CopG/Arc/MetJ family transcriptional regulator n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J5Y7_HALJB
putative CopG/Arc/MetJ family transcriptional regulator
Putative CopG/Arc/MetJ family transcriptional regulator {ECO:0000313|EMBL:ELY34161.1}; Putative transcriptional regulator, CopG/Arc/MetJ family protein {ECO:0000313|EMBL:ADJ13793.1}; TaxID=795797 spec
sw_12_scaffold_20_24
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24020..24736
-----------------
DNA (717bp)
protein (239aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J2ZGE2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN59745.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
hypothetical protein
sw_12_scaffold_20_25
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24870..25703)
-----------------
DNA (834bp)
protein (278aa)
Ribosomal RNA large subunit methyltransferase E {ECO:0000256|HAMAP-Rule:MF_01547}; EC=2.1.1.166 {ECO:0000256|HAMAP-Rule:MF_01547};; 23S rRNA Um2552 methyltransferase {ECO:0000256|HAMAP-Rule:MF_01547};
Ribosomal RNA large subunit methyltransferase E n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MGA2_9EURY
ribosomal RNA methyltransferase RrmJ/FtsJ
sw_12_scaffold_20_26
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25809..26519)
-----------------
DNA (711bp)
protein (237aa)
Predicted transcription regulator, containing DNA-binding HTH domain n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8JAL1_HALJB
putative transcriptional regulator, containing DNA-binding HTH domain
Predicted transcription regulator, containing DNA-binding HTH domain {ECO:0000313|EMBL:ADJ14733.1}; XRE family transcriptional regulator {ECO:0000313|EMBL:ELY39315.1}; TaxID=795797 species="Archaea; E
sw_12_scaffold_20_27
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26692..27717
-----------------
DNA (1026bp)
protein (342aa)
Uncharacterized protein n=1 Tax=Natronococcus amylolyticus DSM 10524 RepID=L9XG77_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY59683.1}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amylolyticus DSM
hypothetical protein
sw_12_scaffold_20_28
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27714..28748
-----------------
DNA (1035bp)
protein (345aa)
Chloromuconate cycloisomerase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MKQ4_9EURY
Chloromuconate cycloisomerase {ECO:0000313|EMBL:EMA44995.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharoly
enolase
sw_12_scaffold_20_29
unknown

Not on your lists

comp(28904..29392)
-----------------
DNA (489bp)
protein (163aa)

This feature has no annotations

Displaying items 1-30 of 71 in total

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