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sw_12_scaffold_32

Search features with annotation key words

Displaying items 1-30 of 49 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_32_1
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3..827)
DNA (825bp) protein (275aa)
tRNA-splicing endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; EC=4.6.1.16 {ECO:0000256|HAMAP-Rule:MF_01834};; tRNA-intron endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; TaxID=469382 species="Archaea;
tRNA-splicing endonuclease n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NTH0_HALBP
tRNA intron endonuclease
sw_12_scaffold_32_2
unknown

Not on your lists

873..1349
DNA (477bp) protein (159aa)

This feature has no annotations

sw_12_scaffold_32_3
Halonotius sp. J07HN4, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1437..2102
DNA (666bp) protein (222aa)
HAD-superfamily hydrolase id=24619741 bin=Halonotius_J07HN4 species=Halonotius sp. J07HN4 genus=Halonotius taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halonotius_J07HN4
Haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED {ECO:0000313|EMBL:ERH07154.1}; TaxID=1070774 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; H
haloacid dehalogenase superfamily protein, subfamily IA, variant 3 with third motif having DD or ED
sw_12_scaffold_32_4
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2199..2645)
DNA (447bp) protein (149aa)
Sodium/calcium exchanger membrane region n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M3H8_HALMO
Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:EMA50231.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
nce2; Na+/Ca2+-antiporter
sw_12_scaffold_32_5
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2627..3244)
DNA (618bp) protein (206aa)
Sodium/calcium exchanger membrane region n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M8N1_9EURY
Sodium/calcium exchanger membrane region {ECO:0000313|EMBL:EMA40964.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
cacA; Na+/Ca2+-antiporter
sw_12_scaffold_32_6
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3344..5698)
DNA (2355bp) protein (785aa)
DEAD/DEAH box helicase domain protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J3S3_HALJB
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ADJ13414.1}; DEAD/DEAH box helicase domain-containing protein {ECO:0000313|EMBL:ELY32754.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halob
DEAD/DEAH box helicase domain-containing protein
sw_12_scaffold_32_7
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5855..7273)
DNA (1419bp) protein (473aa)
MATE efflux family protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MXG1_9EURY
MATE efflux family protein {ECO:0000313|EMBL:EMA49993.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae D
putative efflux protein, MATE family
sw_12_scaffold_32_8
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7439..8374
DNA (936bp) protein (312aa)
Probable lipoyl synthase {ECO:0000256|HAMAP-Rule:MF_00206}; EC=2.8.1.8 {ECO:0000256|HAMAP-Rule:MF_00206};; Lip-syn {ECO:0000256|HAMAP-Rule:MF_00206}; Lipoate synthase {ECO:0000256|HAMAP-Rule:MF_00206}
lip; lipoyl synthase (EC:2.8.1.-)
Probable lipoyl synthase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MV42_HALMO
sw_12_scaffold_32_9
unknown

Not on your lists

8857..9471
DNA (615bp) protein (205aa)

This feature has no annotations

sw_12_scaffold_32_10
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9566..10249)
DNA (684bp) protein (228aa)
Bacterio-opsin activator HTH domain-containing protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MJ78_9EURY
Bacterio-opsin activator HTH domain-containing protein {ECO:0000313|EMBL:EMA44784.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" sour
bacterio-opsin activator
sw_12_scaffold_32_11
Haloferax gibbonsii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10256..11098)
DNA (843bp) protein (281aa)
Putative transcriptional regulator n=2 Tax=Haloferax RepID=M0H4D1_9EURY
Putative transcriptional regulator {ECO:0000313|EMBL:ELZ79381.1}; TaxID=1227459 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax gibbonsii A
transcriptional regulator
sw_12_scaffold_32_12
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11555..12352
DNA (798bp) protein (266aa)
TrmB family transcriptional regulator n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MMU5_9EURY
TrmB family transcriptional regulator {ECO:0000313|EMBL:EMA46698.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sa
transcriptional regulator TrmB
sw_12_scaffold_32_13
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12808..13479
DNA (672bp) protein (224aa)
Bacterio-opsin activator HTH domain-containing protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MJZ6_9EURY
Bacterio-opsin activator HTH domain-containing protein {ECO:0000313|EMBL:EMA44780.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" sour
bacterio-opsin activator
sw_12_scaffold_32_14
unknown

Not on your lists

13761..14300
DNA (540bp) protein (180aa)

This feature has no annotations

sw_12_scaffold_32_15
unknown

Not on your lists

14381..14716
DNA (336bp) protein (112aa)

This feature has no annotations

sw_12_scaffold_32_16
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15506..16444
DNA (939bp) protein (313aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KAD2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA17758.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
hypothetical protein
sw_12_scaffold_32_17
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16933..18312
DNA (1380bp) protein (460aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MDH6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA42719.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_12_scaffold_32_18
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18449..19543
DNA (1095bp) protein (365aa)
glycoside hydrolase family protein id=24613700 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Glycoside hydrolase family protein {ECO:0000313|EMBL:ESP89755.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candid
glycoside hydrolase family protein
sw_12_scaffold_32_19
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19750..20856
DNA (1107bp) protein (369aa)
Pyruvate dehydrogenase (Acetyl-transferring) E1 component subunit alpha n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LJZ3_9EURY
Pyruvate dehydrogenase (Acetyl-transferring) E1 component subunit alpha {ECO:0000313|EMBL:EMA33856.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobifo
pyruvate dehydrogenase E1 component subunit alpha
sw_12_scaffold_32_20
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20861..21958
DNA (1098bp) protein (366aa)
Pyruvate dehydrogenase n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W9U9_9EURY
Pyruvate dehydrogenase
Pyruvate dehydrogenase {ECO:0000313|EMBL:AGN01834.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.;
sw_12_scaffold_32_21
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21958..23595
DNA (1638bp) protein (546aa)
Branched-chain alpha-keto acid dehydrogenase subunit E2 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MEQ6_9EURY
Branched-chain alpha-keto acid dehydrogenase subunit E2 {ECO:0000313|EMBL:EMA43149.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" sou
catalytic domain of components of various dehydrogenase complexes
sw_12_scaffold_32_22
Haloferax mucosum, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23727..24407
DNA (681bp) protein (227aa)
short-chain family oxidoreductase (EC:1.1.1.-)
Short chain dehydrogenase n=1 Tax=Haloferax mucosum ATCC BAA-1512 RepID=M0IDN4_9EURY
Short chain dehydrogenase {ECO:0000313|EMBL:ELZ93968.1}; TaxID=662479 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax mucosum ATCC BAA-1512
sw_12_scaffold_32_23
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24580..26004
DNA (1425bp) protein (475aa)
Dihydrolipoyl dehydrogenase {ECO:0000256|RuleBase:RU003692}; EC=1.8.1.4 {ECO:0000256|RuleBase:RU003692};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae
Dihydrolipoyl dehydrogenase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCS5_9EURY
dihydrolipoamide dehydrogenase
sw_12_scaffold_32_24
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26104..26436
DNA (333bp) protein (111aa)
Uncharacterized protein n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9VX56_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY41576.1}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum sulfidifaciens J
hypothetical protein
sw_12_scaffold_32_25
unknown

Not on your lists

26969..27070
DNA (102bp) protein (34aa)

This feature has no annotations

sw_12_scaffold_32_26
unknown

Not on your lists

comp(27081..27296)
DNA (216bp) protein (72aa)

This feature has no annotations

sw_12_scaffold_32_27
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

27373..27813
DNA (441bp) protein (147aa)
Thioesterase superfamily protein n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9W453_9EURY
acyl-CoA thioester hydrolase, YbgC/YbaW family
Thioesterase superfamily protein {ECO:0000313|EMBL:ELY43128.1}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum bangens
sw_12_scaffold_32_28
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27832..29427)
DNA (1596bp) protein (532aa)
NAD-dependent aldehyde dehydrogenase n=1 Tax=Natronococcus occultus SP4 RepID=L0K6B7_9EURY
NAD-dependent aldehyde dehydrogenase
NAD-dependent aldehyde dehydrogenase {ECO:0000313|EMBL:AGB39678.1}; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus occu
sw_12_scaffold_32_29
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

29587..30393
DNA (807bp) protein (269aa)
prephenate dehydratase (EC:4.2.1.51)
Prephenate dehydratase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N6U1_9EURY
Prephenate dehydratase {ECO:0000313|EMBL:EMA53566.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JCM
sw_12_scaffold_32_30
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

30557..31012
DNA (456bp) protein (152aa)
Heat shock protein Hsp20 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MMP8_9EURY
Heat shock protein Hsp20 {ECO:0000313|EMBL:EMA46946.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
molecular chaperone
Displaying items 1-30 of 49 in total

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