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sw_12_scaffold_4

Search features with annotation key words

Displaying items 1-30 of 82 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_4_1
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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2..592
DNA (591bp) protein (197aa)
Putative metal ion permease n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LRX2_9EURY
Putative metal ion permease {ECO:0000313|EMBL:EMA35848.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis
putative metal ion permease
sw_12_scaffold_4_2
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(824..1162)
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MK36_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA46011.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_12_scaffold_4_3
unknown

Not on your lists

comp(1524..1700)
DNA (177bp) protein (59aa)

This feature has no annotations

sw_12_scaffold_4_4
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2068..2664
DNA (597bp) protein (199aa)
Putative transcriptional regulator, AsnC family protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MK12_9EURY
Putative transcriptional regulator, AsnC family protein {ECO:0000313|EMBL:EMA46012.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" sou
putative transcriptional regulator, AsnC family protein
sw_12_scaffold_4_5
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3092..4234
DNA (1143bp) protein (381aa)
3-hydroxyacyl-CoA dehydrogenase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LRF4_9EURY
3-hydroxyacyl-CoA dehydrogenase {ECO:0000313|EMBL:EMA35678.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hameline
3-hydroxyacyl-CoA dehydrogenase
sw_12_scaffold_4_6
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4231..4851
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MSC0_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA47639.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
thioesterase superfamily protein
sw_12_scaffold_4_7
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4848..5402
DNA (555bp) protein (185aa)
Monoamine oxidase regulatory protein n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4VSI0_9EURY
monoamine oxidase regulatory protein
Monoamine oxidase regulatory protein {ECO:0000313|EMBL:AGN00165.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp.
sw_12_scaffold_4_8
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5681..6589
DNA (909bp) protein (303aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RYR3_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB61881.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
sw_12_scaffold_4_9
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6835..7806
DNA (972bp) protein (324aa)
Diphosphomevalonate decarboxylase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M6T7_HALMO
Diphosphomevalonate decarboxylase {ECO:0000313|EMBL:EMA40339.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhua
diphosphomevalonate decarboxylase
sw_12_scaffold_4_10
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8209..9597
DNA (1389bp) protein (463aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CGI5_9EURY
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:ELZ22366.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;"
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
sw_12_scaffold_4_11
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9694..10080)
DNA (387bp) protein (129aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DDA8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ33450.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
hypothetical protein
sw_12_scaffold_4_12
unknown

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10125..10361
DNA (237bp) protein (79aa)

This feature has no annotations

sw_12_scaffold_4_13
unknown

Not on your lists

comp(10263..10595)
DNA (333bp) protein (111aa)

This feature has no annotations

sw_12_scaffold_4_14
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10714..11196)
DNA (483bp) protein (161aa)
Cytochrome aa3 controlling protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M1N9_9EURY
Cytochrome aa3 controlling protein {ECO:0000313|EMBL:EMA39747.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamel
ccp; cytochrome aa3 controlling protein
sw_12_scaffold_4_15
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11368..13680
DNA (2313bp) protein (771aa)
Bifunctional malic enzyme oxidoreductase/phosphotransacetylase {ECO:0000313|EMBL:EMA50979.1}; EC=1.1.1.40 {ECO:0000313|EMBL:EMA50979.1};; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; H
maeB2; malate dehydrogenase (oxaloacetate-decarboxylating) (EC:1.1.1.40)
Bifunctional malic enzyme oxidoreductase/phosphotransacetylase n=2 Tax=Halococcus RepID=M0N1J6_9EURY
sw_12_scaffold_4_16
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13746..13946)
DNA (201bp) protein (67aa)
Small CPxCG-related zinc finger protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XMV9_NATM8
small CPxCG-related zinc finger protein
Small CPxCG-related zinc finger protein {ECO:0000313|EMBL:CCQ35222.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomon
sw_12_scaffold_4_17
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14056..14415
DNA (360bp) protein (120aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MDW0_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA42874.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
sw_12_scaffold_4_18
Halorubrum coriense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14412..14603
DNA (192bp) protein (64aa)
Transcription regulator-like protein n=1 Tax=Halorubrum coriense DSM 10284 RepID=M0ELX7_9EURY
Transcription regulator-like protein {ECO:0000313|EMBL:ELZ47897.1}; TaxID=1227466 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum coriens
hypothetical protein
sw_12_scaffold_4_19
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14659..15588)
DNA (930bp) protein (310aa)
Ribonuclease Z {ECO:0000256|HAMAP-Rule:MF_01818, ECO:0000313|EMBL:ELY64623.1}; Short=RNase Z {ECO:0000256|HAMAP-Rule:MF_01818};; EC=3.1.26.11 {ECO:0000256|HAMAP-Rule:MF_01818};; tRNA 3 endonuclease {E
Ribonuclease Z n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9XVI0_9EURY
ribonuclease Z
sw_12_scaffold_4_20
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15677..16726
DNA (1050bp) protein (350aa)
Replication factor C n=1 Tax=Halobacterium sp. DL1 RepID=G4IBQ3_9EURY
ATPase AAA {ECO:0000313|EMBL:AHG02583.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp. DL1.;"
rfcC; replication factor C small subunit 2
sw_12_scaffold_4_21
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16897..18267)
DNA (1371bp) protein (457aa)
Hydantoinase/carbamoylase family amidase n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LSG7_9EURY
Hydantoinase/carbamoylase family amidase {ECO:0000313|EMBL:EMA36083.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma laci
amidase, hydantoinase/carbamoylase family protein
sw_12_scaffold_4_22
Pseudomonas syringae, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18496..18861)
DNA (366bp) protein (122aa)
Uncharacterized protein n=8 Tax=Pseudomonas syringae pv. actinidiae RepID=S6KT32_PSESF
Uncharacterized protein {ECO:0000313|EMBL:EPM65190.1}; TaxID=1104682 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas; Pseudomonas syringae.;" sou
antibiotic biosynthesis monooxygenase
sw_12_scaffold_4_23
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19119..19883)
DNA (765bp) protein (255aa)
Proteasome subunit beta {ECO:0000256|HAMAP-Rule:MF_02113}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_02113};; 20S proteasome beta subunit {ECO:0000256|HAMAP-Rule:MF_02113}; Proteasome core protein PsmB {
psmB; proteasome subunit beta (EC:3.4.25.1)
Proteasome subunit beta n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M435_HALMO
sw_12_scaffold_4_24
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19880..20629)
DNA (750bp) protein (250aa)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
psmA; proteasome alpha subunit (EC:3.4.25.1)
Proteasome subunit alpha n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MJT1_9EURY
sw_12_scaffold_4_25

Not on your lists

20906..21802
DNA (897bp) protein (299aa)
uvsE; UV damage endonuclease (EC:3.-.-.-)
UV-damage endonuclease n=1 Tax=uncultured archaeon A07HN63 RepID=V4Y6V2_9ARCH
UV-damage endonuclease {ECO:0000313|EMBL:ESS08491.1}; TaxID=1412873 species="Archaea; environmental samples.;" source="uncultured archaeon A07HN63.;"
sw_12_scaffold_4_26
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21922..22266
DNA (345bp) protein (115aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D034_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ28830.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
hypothetical protein
sw_12_scaffold_4_27
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22263..22652
DNA (390bp) protein (130aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
Ribonuclease VapC n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N212_9EURY
putative nucleic acid-binding protein, contains PIN domain
sw_12_scaffold_4_28
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22663..24795)
DNA (2133bp) protein (711aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LTL5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA35744.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
sw_12_scaffold_4_29
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24996..25373)
DNA (378bp) protein (126aa)
Zinc finger SWIM domain-containing protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LXD9_9EURY
Zinc finger SWIM domain-containing protein {ECO:0000313|EMBL:EMA38111.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococc
hypothetical protein
sw_12_scaffold_4_30
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25444..26478)
DNA (1035bp) protein (345aa)
DNA repair and recombination protein RadA n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N861_9EURY
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Haloc
radA; DNA repair and recombination protein RadA
Displaying items 1-30 of 82 in total

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