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sw_12_scaffold_5545

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Displaying 13 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_5545_1
unknown

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comp(290..496)
DNA (207bp) protein (69aa)

This feature has no annotations

sw_12_scaffold_5545_2

Not on your lists

comp(801..1421)
DNA (621bp) protein (207aa)
Putative nucleic acid-binding protein, contains PIN domain protein n=1 Tax=uncultured archaeon A07HR60 RepID=V4YBH7_9ARCH
Putative nucleic acid-binding protein, contains PIN domain protein {ECO:0000313|EMBL:ESS10291.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
hypothetical protein
sw_12_scaffold_5545_3
unknown

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comp(1428..1757)
DNA (330bp) protein (110aa)

This feature has no annotations

sw_12_scaffold_5545_4
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1853..2959)
DNA (1107bp) protein (369aa)
Methionine synthase {ECO:0000256|HAMAP-Rule:MF_00288}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00288};; Homocysteine methyltransferase {ECO:0000256|HAMAP-Rule:MF_00288}; TaxID=751944 species="Archaea; E
Probable methylcobalamin:homocysteine methyltransferase n=1 Tax=Halobacterium sp. DL1 RepID=G4IBG8_9EURY
methionine synthase
sw_12_scaffold_5545_5
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3002..3862)
DNA (861bp) protein (287aa)
Cobalamin-independent synthase MetE domain-containing protein n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0BIC8_9EURY
Cobalamin-independent synthase MetE domain-containing protein {ECO:0000313|EMBL:ELZ10232.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;"
methionine synthase II (cobalamin-independent)
sw_12_scaffold_5545_6
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5152..5772)
DNA (621bp) protein (207aa)
Methylase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QS76_9EURY
Methylase {ECO:0000313|EMBL:EFW92845.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophilus DX253.;"
methylase
sw_12_scaffold_5545_7
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(5769..6485)
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Halarchaeum acidiphilum RepID=UPI000367DB32
Small-conductance mechanosensitive channel {ECO:0000313|EMBL:CQR49551.1}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp.
small conductance mechanosensitive ion channel (MscS) family transporter
sw_12_scaffold_5545_8
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6798..7142)
DNA (345bp) protein (115aa)
Probable ribosomal RNA small subunit methyltransferase A {ECO:0000255|HAMAP-Rule:MF_00607}; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00607};; 16S rRNA dimethyladenosine transferase {ECO:0000255|HAMAP-Rul
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RSMA_NATPD
ksgA; dimethyladenosine transferase
sw_12_scaffold_5545_9
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(7535..8125)
DNA (591bp) protein (197aa)
Uncharacterized protein n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L3F9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA28076.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
hypothetical protein
sw_12_scaffold_5545_10
unknown

Not on your lists

8226..8633
DNA (408bp) protein (136aa)

This feature has no annotations

sw_12_scaffold_5545_11
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(8642..9025)
DNA (384bp) protein (128aa)
DNA-directed RNA polymerase subunit F {ECO:0000313|EMBL:EMA28077.1}; EC=2.7.7.6 {ECO:0000313|EMBL:EMA28077.1};; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae;
DNA-directed RNA polymerase subunit F n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L3C5_9EURY
hypothetical protein
sw_12_scaffold_5545_12
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(9022..9312)
DNA (291bp) protein (97aa)
50S ribosomal protein L21e n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LZ63_9EURY
50S ribosomal protein L21e {ECO:0000256|HAMAP-Rule:MF_00369, ECO:0000256|SAAS:SAAS00016423}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.
50S ribosomal protein L21e
sw_12_scaffold_5545_13
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9342..9638)
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) RepID=Q18J79_HALWD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAJ51932.1}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (strain
Displaying 13 items

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