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sw_12_scaffold_591

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_591_1
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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2..238
DNA (237bp) protein (79aa)
Uncharacterized protein n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3RA60_HALMT
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFK21120.1}; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax mediterranei (strain AT
sw_12_scaffold_591_2
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(294..863)
DNA (570bp) protein (190aa)
30S ribosomal protein S7 n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCA1_9EURY
30S ribosomal protein S7 {ECO:0000256|HAMAP-Rule:MF_00480, ECO:0000256|RuleBase:RU003621}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
30S ribosomal protein S7P
sw_12_scaffold_591_3
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(865..1293)
DNA (429bp) protein (143aa)
rps12; 30S ribosomal protein S12
rps12; 30S ribosomal protein S12 id=24616452 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
30S ribosomal protein S12 {ECO:0000256|HAMAP-Rule:MF_00403, ECO:0000256|RuleBase:RU004490}; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" sour
sw_12_scaffold_591_4
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1413..2477
DNA (1065bp) protein (355aa)
Probable cyclic pyranopterin monophosphate synthase {ECO:0000256|HAMAP-Rule:MF_01225}; EC=4.1.99.18 {ECO:0000256|HAMAP-Rule:MF_01225};; Molybdenum cofactor biosynthesis protein A {ECO:0000256|HAMAP-Ru
Probable cyclic pyranopterin monophosphate synthase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MCI8_HALMO
molybdenum cofactor biosynthesis protein A
sw_12_scaffold_591_5
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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2619..2792
DNA (174bp) protein (58aa)
Uncharacterized protein (Fragment) n=1 Tax=Halorubrum arcis JCM 13916 RepID=M0P8A0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA66387.1}; Flags: Fragment;; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum ar
hypothetical protein
sw_12_scaffold_591_trna_1
unknown

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2989..3073
DNA (85bp)
transferRNA
sw_12_scaffold_591_6
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


3178..3717
DNA (540bp) protein (180aa)
30S ribosomal protein S13 n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JMG8_NATP1
archaeal ribosomal protein S13P
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pellirubrum (strain
sw_12_scaffold_591_7
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3717..4229
DNA (513bp) protein (171aa)
30S ribosomal protein S4 n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AIJ3_NATGS
ribosomal protein S4/S9
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=797304 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronobacterium.;"
sw_12_scaffold_591_8
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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4229..4615
DNA (387bp) protein (129aa)
30S ribosomal protein S11 n=1 Tax=Natronorubrum tibetense GA33 RepID=L9W7A1_9EURY
30S ribosomal protein S11
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=797299 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola larsenii
sw_12_scaffold_591_9
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4615..5349
DNA (735bp) protein (245aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit D n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ09_HALMD
RNA polymerase insert
sw_12_scaffold_591_10
Haloquadratum_walsbyi_J07HQW2, Haloquadratum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5352..6044
DNA (693bp) protein (231aa)
id=24631370 bin=Haloquadratum_walsbyi_J07HQW2 tax=Haloquadratum_walsbyi_J07HQW2
id=24631370 bin=Haloquadratum_walsbyi_J07HQW2 tax=Haloquadratum_walsbyi_J07HQW2
sw_12_scaffold_591_trna_2
unknown

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5470..5554
DNA (85bp)
transferRNA
sw_12_scaffold_591_11
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


6041..6391
DNA (351bp) protein (117aa)
50S ribosomal protein L18e n=3 Tax=Natrinema RepID=I7BJ47_NATSJ
ribosomal protein L15
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" sour
sw_12_scaffold_591_12

Not on your lists


6388..6825
DNA (438bp) protein (146aa)
50S ribosomal protein L13 n=1 Tax=halophilic archaeon DL31 RepID=G2MJ53_9ARCH
50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_12_scaffold_591_13

Not on your lists


6819..7214
DNA (396bp) protein (132aa)
SSU ribosomal protein S9P n=1 Tax=uncultured archaeon A07HB70 RepID=V4XDF2_9ARCH
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
rps9p; 30S ribosomal protein S9P
sw_12_scaffold_591_14
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


7217..7408
DNA (192bp) protein (64aa)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
DNA-directed RNA polymerase subunit N (EC:2.7.7.6)
DNA-directed RNA polymerase subunit N n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N7B6_9EURY
sw_12_scaffold_591_15
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7405..7584
DNA (180bp) protein (60aa)
rpoK; DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Halof
DNA-directed RNA polymerase subunit K n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R8A1_HALMT
sw_12_scaffold_591_16
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7581..8777
DNA (1197bp) protein (399aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:EMA41743.1}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:EMA41743.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMA
Enolase n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0M8R9_9EURY
phosphopyruvate hydratase
sw_12_scaffold_591_17
Natronorubrum bangense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


8774..9355
DNA (582bp) protein (194aa)
30S ribosomal protein S2 n=1 Tax=Natronorubrum bangense JCM 10635 RepID=L9WWE6_9EURY
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=1227500 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" so
ribosomal protein Sa/S2
sw_12_scaffold_591_18
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


9309..9515
DNA (207bp) protein (69aa)
30S ribosomal protein S2 n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W8W4_9EURY
Suspect SCG annotation. See neighboring gene [sw_12_scaffold_591_17].
rps2P; 30S ribosomal protein S2
30S ribosomal protein S2 {ECO:0000256|HAMAP-Rule:MF_00291, ECO:0000256|SAAS:SAAS00012212}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" so
sw_12_scaffold_591_19

Not on your lists

comp(9690..10580)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MQ54_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN07823.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_12_scaffold_591_20
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10740..11759
DNA (1020bp) protein (340aa)
Mevalonate kinase {ECO:0000256|HAMAP-Rule:MF_00217}; Short=MK {ECO:0000256|HAMAP-Rule:MF_00217};; Short=MVK {ECO:0000256|HAMAP-Rule:MF_00217};; EC=2.7.1.36 {ECO:0000256|HAMAP-Rule:MF_00217};; TaxID=79
Mevalonate kinase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CUN7_9EURY
mevalonate kinase
sw_12_scaffold_591_21
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11756..12496
DNA (741bp) protein (247aa)
Isopentenyl phosphate kinase {ECO:0000256|PIRNR:PIRNR016496}; Short=IPK {ECO:0000256|PIRNR:PIRNR016496};; EC=2.7.4.26 {ECO:0000256|PIRNR:PIRNR016496};; TaxID=1230451 species="Archaea; Euryarchaeota; H
isopentenyl phosphate kinase (EC:2.7.4.-)
Isopentenyl phosphate kinase n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KQZ1_HALAR
sw_12_scaffold_591_22

Not on your lists

comp(12580..13920)
DNA (1341bp) protein (447aa)
Lignostilbene-alpha,beta-dioxygenase related enzyme n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y5M3_9ARCH
Lignostilbene-alpha,beta-dioxygenase related enzyme {ECO:0000313|EMBL:ESS06342.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
lignostilbene-alpha,beta-dioxygenase-like enzyme
sw_12_scaffold_591_23
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14003..14797)
DNA (795bp) protein (265aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KPD3_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA22793.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
sw_12_scaffold_591_24
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14934..17324
DNA (2391bp) protein (797aa)
DEAD/H associated domain protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NWL9_HALMD
ATP-dependent helicase
DEAD/H associated domain protein {ECO:0000313|EMBL:ACV48229.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mu
Displaying 26 items

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