ggKbase home page

sw_12_scaffold_101

Search features with annotation key words

Displaying 28 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_101_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(485..1423)
DNA (939bp) protein (313aa)
N-acetylmuramic acid 6-phosphate etherase {ECO:0000256|HAMAP-Rule:MF_00068, ECO:0000256|SAAS:SAAS00085795}; Short=MurNAc-6-P etherase {ECO:0000256|HAMAP-Rule:MF_00068};; EC=4.2.1.126 {ECO:0000256|HAMA
N-acetylmuramic acid 6-phosphate etherase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4N1_SALRM
RpiR family transcriptional regulator
sw_12_scaffold_101_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(1527..2102)
DNA (576bp) protein (192aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4N2_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH22987.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_101_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

2333..3547
DNA (1215bp) protein (405aa)
DNA replication and repair protein RecF n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4N4_SALRM
recF; DNA replication and repair protein RecF
DNA replication and repair protein RecF {ECO:0000256|HAMAP-Rule:MF_00365, ECO:0000256|SAAS:SAAS00122784}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodoth
sw_12_scaffold_101_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3604..5139
DNA (1536bp) protein (512aa)
hypothetical protein id=24656881 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH22990.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_101_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(5264..5713)
DNA (450bp) protein (150aa)
Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein n=2 Tax=Salinibacter ruber RepID=D5H4N6_SALRM
maoC; phosphate acetyltransferase
Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein {ECO:0000313|EMBL:ABC46333.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
sw_12_scaffold_101_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

6061..8661
DNA (2601bp) protein (867aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S6F8_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC43937.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_101_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9215..11269)
DNA (2055bp) protein (685aa)
Glycogen phosphorylase {ECO:0000313|EMBL:CBH23000.1}; EC=2.4.1.1 {ECO:0000313|EMBL:CBH23000.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
Glycogen phosphorylase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4P5_SALRM
glgP; glycogen phosphorylase
sw_12_scaffold_101_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11980..12708)
DNA (729bp) protein (243aa)
transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B383B7
alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory proteinphoP {ECO:0000313|EMBL:ABC44211.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
sw_12_scaffold_101_9
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13043..13261
DNA (219bp) protein (73aa)
CsbD family protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3K9Q6_9RHIZ
CsbD family protein {ECO:0000313|EMBL:EMG51940.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
protein yjbJ
sw_12_scaffold_101_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13584..14849)
DNA (1266bp) protein (422aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B653DB
signal transduction histidine kinase
sw_12_scaffold_101_11
Coprinopsis cinerea, Coprinopsis, Agaricales, Agaricomycetidae, Basidiomycota, Fungi

Not on your lists

15302..15850
DNA (549bp) protein (183aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0002E5320D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAU86128.1}; TaxID=240176 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; C
sw_12_scaffold_101_12
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

comp(15975..18377)
DNA (2403bp) protein (801aa)
Transcriptional regulatory protein-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIZ5_KORVE
transcriptional regulatory protein-like
Transcriptional regulatory protein-like protein {ECO:0000313|EMBL:ABF43155.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kori
sw_12_scaffold_101_13
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18594..18815)
DNA (222bp) protein (74aa)
hypothetical protein id=12555060 bin=CNBR_ACIDO species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EIT72047.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboni
hypothetical protein
sw_12_scaffold_101_14
Gloeocapsa sp. PCC 7428, Gloeocapsa, Chroococcales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

19238..19966
DNA (729bp) protein (243aa)
Tetratricopeptide TPR_1 repeat-containing protein n=1 Tax=Gloeocapsa sp. PCC 7428 RepID=K9XNC7_9CHRO
Tetratricopeptide TPR_1 repeat-containing protein
Tetratricopeptide TPR_1 repeat-containing protein {ECO:0000313|EMBL:AFZ33197.1}; Flags: Precursor;; TaxID=1173026 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Chroococcales; Gloeocapsa.;"
sw_12_scaffold_101_15
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(20145..20867)
DNA (723bp) protein (241aa)
LuxR family transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B36AC2
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEN73606.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus
sw_12_scaffold_101_16
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21441..22025)
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2EJE0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERJ18432.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera
sw_12_scaffold_101_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22508..23680
DNA (1173bp) protein (391aa)
Microsomal dipeptidase {ECO:0000313|EMBL:CBH23388.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CBH23388.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
Microsomal dipeptidase n=2 Tax=Salinibacter ruber RepID=D5H5T3_SALRM
microsomal dipeptidase
sw_12_scaffold_101_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

23956..24633
DNA (678bp) protein (226aa)
OmpA family protein
OmpA family protein id=24657196 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
OmpA family protein {ECO:0000313|EMBL:ABC44333.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (s
sw_12_scaffold_101_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


comp(25340..25687)
DNA (348bp) protein (116aa)
50S ribosomal protein L20 n=2 Tax=Salinibacter ruber RepID=RL20_SALRD
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_12_scaffold_101_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


comp(25838..26035)
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=RL35_SALRD
hypothetical protein
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_12_scaffold_101_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26231..26689)
DNA (459bp) protein (153aa)
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=24658751 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_12_scaffold_101_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26933..28903)
DNA (1971bp) protein (657aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=24658750 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
thrS; threonyl-tRNA synthetase
sw_12_scaffold_101_trna_1
unknown

Not on your lists

comp(29010..29083)
DNA (74bp)
transferRNA
sw_12_scaffold_101_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

29335..30003
DNA (669bp) protein (223aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801, ECO:0000313|EMBL:CBH25938.1}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801, ECO:0000313|EMBL:CBH25938.1};; Deoxyinosine 3'endonuclease {ECO:0000256|HAM
Endonuclease V n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD33_SALRM
nfi; endonuclease V
sw_12_scaffold_101_24
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

30067..30672
DNA (606bp) protein (202aa)
Acetyltransferase, GNAT family n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD32_SALRM
GNAT family acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:CBH25937.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibact
sw_12_scaffold_101_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(30791..31351)
DNA (561bp) protein (187aa)
Uncharacterized protein n=2 Tax=Salinibacter ruber RepID=D5HD30_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25935.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_101_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

31650..32159
DNA (510bp) protein (170aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HD29_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH25934.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_101_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

32238..32441
DNA (204bp) protein (68aa)
Uncharacterized protein {ECO:0000313|EMBL:ABC46172.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
Displaying 28 items

View Taxonomy