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sw_12_scaffold_56

Search features with annotation key words

Displaying items 1-30 of 51 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_56_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1..612
DNA (612bp) protein (204aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incerta
Demethylmenaquinone methyltransferase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7B8_SALRM
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase ubiE
sw_12_scaffold_56_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

634..1473
DNA (840bp) protein (280aa)
prmA; 50S ribosomal protein L11 methyltransferase; K02687 ribosomal protein L11 methyltransferase [EC:2.1.1.-] id=24657695 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Ribosomal protein L11 methyltransferase {ECO:0000255|HAMAP-Rule:MF_00735}; Short=L11 Mtase {ECO:0000255|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000255|HAMAP-Rule:MF_00735};; TaxID=309807 species="Bact
prmA; 50S ribosomal protein L11 methyltransferase
sw_12_scaffold_56_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1545..2504
DNA (960bp) protein (320aa)
Ppx/GppA phosphatase family protein; K01524 exopolyphosphatase / guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase [EC:3.6.1.11 3.6.1.40] id=24657694 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Ppx/GppA phosphatase family protein
Ppx/GppA phosphatase family {ECO:0000313|EMBL:CBH23921.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter
sw_12_scaffold_56_4
Microcoleus vaginatus, Microcoleus, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

2733..3263
DNA (531bp) protein (177aa)
DNA polymerase beta domain protein region n=1 Tax=Microcoleus vaginatus FGP-2 RepID=F5UE33_9CYAN
DNA polymerase beta domain-containing protein
DNA polymerase beta domain protein region {ECO:0000313|EMBL:EGK89371.1}; TaxID=756067 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Microcoleus.;" source="Microcoleus vagin
sw_12_scaffold_56_5
unknown

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3260..3460
DNA (201bp) protein (67aa)

This feature has no annotations

sw_12_scaffold_56_6
unknown

Not on your lists

comp(4008..4127)
DNA (120bp) protein (40aa)

This feature has no annotations

sw_12_scaffold_56_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4166..4606
DNA (441bp) protein (147aa)
Mrp protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S4C5_SALRD
mrp; hypothetical protein
Mrp protein {ECO:0000313|EMBL:ABC44679.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain DS
sw_12_scaffold_56_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4777..5058
DNA (282bp) protein (94aa)
Uncharacterized protein n=2 Tax=Salinibacter ruber RepID=D5H7B4_SALRM
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ABC44958.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
sw_12_scaffold_56_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(5119..5742)
DNA (624bp) protein (208aa)
Conserved hypohtetical protein, secreted n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7B3_SALRM
hypothetical protein
Conserved hypohtetical protein, secreted {ECO:0000313|EMBL:CBH23918.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
sw_12_scaffold_56_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

5954..7237
DNA (1284bp) protein (428aa)
Translation initiation factor eIF-2B alpha subunit n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S4C9_SALRD
translation initiation factor eIF-2B alpha subunit
Translation initiation factor eIF-2B alpha subunit {ECO:0000313|EMBL:ABC45786.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;
sw_12_scaffold_56_11
Nitrococcus mobilis, Nitrococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7261..7686)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BME7_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EAR23485.1}; TaxID=314278 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Ectothiorhodospiraceae; Nitrococcus.;" source="Nitrococcus mob
hypothetical protein
sw_12_scaffold_56_12
Pelodictyon phaeoclathratiforme, Pelodictyon, Chlorobiales, Chlorobia, Chlorobi, Bacteria

Not on your lists

comp(7671..8066)
DNA (396bp) protein (132aa)
DNA polymerase beta domain protein region n=1 Tax=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) RepID=B4SAE6_PELPB
DNA polymerase beta domain-containing protein
DNA polymerase beta domain protein region {ECO:0000313|EMBL:ACF43832.1}; TaxID=324925 species="Bacteria; Chlorobi; Chlorobia; Chlorobiales; Chlorobiaceae; Chlorobium/Pelodictyon group; Pelodictyon.;"
sw_12_scaffold_56_trna_1
unknown

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8316..8386
DNA (71bp)
transferRNA
sw_12_scaffold_56_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8433..9386
DNA (954bp) protein (318aa)
Ribose-phosphate pyrophosphokinase {ECO:0000256|HAMAP-Rule:MF_00583, ECO:0000313|EMBL:CBH23915.1}; Short=RPPK {ECO:0000256|HAMAP-Rule:MF_00583};; EC=2.7.6.1 {ECO:0000256|HAMAP-Rule:MF_00583, ECO:00003
Ribose-phosphate pyrophosphokinase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7B0_SALRM
prs; ribose-phosphate pyrophosphokinase
sw_12_scaffold_56_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


9686..10294
DNA (609bp) protein (203aa)
rplY; 50S ribosomal protein L25
rplY; 50S ribosomal protein L25; K02897 large subunit ribosomal protein L25 id=24657687 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
50S ribosomal protein L25 {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023358}; General stress protein CTC {ECO:0000256|HAMAP-Rule:MF_01334, ECO:0000256|SAAS:SAAS00023360}; TaxID=761659 sp
sw_12_scaffold_56_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10407..10973
DNA (567bp) protein (189aa)
peptidyl-tRNA hydrolase; K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] id=24657686 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Peptidyl-tRNA hydrolase {ECO:0000255|HAMAP-Rule:MF_00083}; Short=PTH {ECO:0000255|HAMAP-Rule:MF_00083};; EC=3.1.1.29 {ECO:0000255|HAMAP-Rule:MF_00083};; TaxID=309807 species="Bacteria; Bacteroidetes;
peptidyl-tRNA hydrolase
sw_12_scaffold_56_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11334..13445
DNA (2112bp) protein (704aa)
Putative K(+)-stimulated pyrophosphate-energized sodium pump {ECO:0000256|HAMAP-Rule:MF_01129}; EC=3.6.1.1 {ECO:0000256|HAMAP-Rule:MF_01129};; Membrane-bound sodium-translocating pyrophosphatase {ECO:
potassium transporter n=1 Tax=Salisaeta longa RepID=UPI0003B4CF23
V-type H(+)-translocating pyrophosphatase
sw_12_scaffold_56_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

13678..13974
DNA (297bp) protein (99aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4A7_SALRM
conserved hypothetical protein containing DUF497
Uncharacterized protein {ECO:0000313|EMBL:CBH22747.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_56_18
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13940..14269
DNA (330bp) protein (110aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B438E7
Uncharacterized protein {ECO:0000313|EMBL:GAK69163.1}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;"
hypothetical protein
sw_12_scaffold_56_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

14357..16126
DNA (1770bp) protein (590aa)
2-oxo acid dehydrogenases acyltransferase (Catalytic domain) protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S4D4_SALRD
2-oxo acid dehydrogenase acyltransferase catalytic subunit
2-oxo acid dehydrogenases acyltransferase (Catalytic domain) protein {ECO:0000313|EMBL:ABC43857.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermace
sw_12_scaffold_56_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(16239..16568)
DNA (330bp) protein (110aa)
TrkA domain protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7A5_SALRM
trkA domain protein
TrkA domain protein {ECO:0000313|EMBL:ABC44474.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (s
sw_12_scaffold_56_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16694..18022
DNA (1329bp) protein (443aa)
transporter
transporter id=24659287 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Transporter, putative {ECO:0000313|EMBL:ABC44512.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber
sw_12_scaffold_56_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18185..18772
DNA (588bp) protein (196aa)
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH24453.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
hypothetical protein id=24659286 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_12_scaffold_56_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(18788..19720)
DNA (933bp) protein (311aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S2X1_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC45035.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_56_24
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

19985..20581
DNA (597bp) protein (199aa)
Bifunctional protein PyrR n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S2X2_SALRD
phosphoribosyl transferase domain-containing protein
Bifunctional protein PyrR {ECO:0000256|HAMAP-Rule:MF_01219}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_12_scaffold_56_25
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20632..21600
DNA (969bp) protein (323aa)
pyrB; aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2] id=24659283 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Aspartate carbamoyltransferase {ECO:0000256|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000256|HAMAP-Rule:MF_00001, ECO:0000313|EMBL:CBH24450.1};; Aspartate transcarbamylase {ECO:0000256|HAMAP-Rule:MF_0000
pyrB; aspartate carbamoyltransferase
sw_12_scaffold_56_26
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21616..23007)
DNA (1392bp) protein (464aa)
hypothetical protein
hypothetical protein id=24659281 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:CBH24447.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_56_27
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23111..25852)
DNA (2742bp) protein (914aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI000378A292
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC46121.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_12_scaffold_56_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

26070..26783
DNA (714bp) protein (238aa)
lolD; lipoprotein releasing system ABC transporter ATP-binding protein
lolD; lipoprotein releasing system ABC transporter ATP-binding protein; K02003 putative ABC transport system ATP-binding protein id=24659280 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
ABC transporter, lipoprotein releasing system, ATP-binding protein {ECO:0000313|EMBL:CBH24446.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae
sw_12_scaffold_56_29
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

26938..29505
DNA (2568bp) protein (856aa)
permease domain-containing protein
Putative permease domain protein {ECO:0000313|EMBL:CBH24445.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
permease; K02004 putative ABC transport system permease protein id=24659279 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Displaying items 1-30 of 51 in total

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