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sw_12_scaffold_3469

Search features with annotation key words

Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_3469_1
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(3..932)
DNA (930bp) protein (310aa)
Enolase {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:EMA27940.1}; EC=4.2.1.11 {ECO:0000256|HAMAP-Rule:MF_00318, ECO:0000313|EMBL:EMA27940.1};; 2-phospho-D-glycerate hydro-lyase {ECO:0000256|HAMA
Enolase n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0L7L4_9EURY
phosphopyruvate hydratase
sw_12_scaffold_3469_2
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(929..1108)
DNA (180bp) protein (60aa)
RNA polymerase Rpb6; K03055 DNA-directed RNA polymerase subunit K [EC:2.7.7.6] id=24655919 bin=uncultured_archaeon_J07HX5 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultured_archaeon_J07HX5
DNA-directed RNA polymerase subunit K {ECO:0000256|HAMAP-Rule:MF_00192}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00192};; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;"
rpoK; DNA-directed RNA polymerase subunit K (EC:2.7.7.6)
sw_12_scaffold_3469_3
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(1111..1311)
DNA (201bp) protein (67aa)
DNA-directed RNA polymerase subunit N (EC:2.7.7.6) id=24648746 bin=uncultivated_archaeon_J07ABHX6 species=Salinarchaeum sp. Harcht-Bsk1 genus=Salinarchaeum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
DNA-directed RNA polymerase subunit N (EC:2.7.7.6)
DNA-directed RNA polymerase subunit N {ECO:0000256|HAMAP-Rule:MF_00250}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00250};; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natri
sw_12_scaffold_3469_4
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1316..1717)
DNA (402bp) protein (134aa)
30S ribosomal protein S9 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ12_HALMD
rps9p; 30S ribosomal protein S9
30S ribosomal protein S9 {ECO:0000256|HAMAP-Rule:MF_00532, ECO:0000256|RuleBase:RU003817}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.
sw_12_scaffold_3469_5
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1711..2040)
DNA (330bp) protein (110aa)
50S ribosomal protein L13 n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ11_HALMD
rpl13p; 50S ribosomal protein L13
50S ribosomal protein L13 {ECO:0000256|HAMAP-Rule:MF_01366}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukoh
sw_12_scaffold_3469_6
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2084..2434)
DNA (351bp) protein (117aa)
50S ribosomal protein L18e n=9 Tax=Haloarcula RepID=RL18E_HALMA
50S ribosomal protein L18
50S ribosomal protein L18e {ECO:0000256|HAMAP-Rule:MF_00329, ECO:0000256|RuleBase:RU000573}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.
sw_12_scaffold_3469_trna_2
unknown

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comp(2453..2537)
DNA (85bp)
transferRNA
sw_12_scaffold_3469_7
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2667..3455)
DNA (789bp) protein (263aa)
DNA-directed RNA polymerase subunit D {ECO:0000256|HAMAP-Rule:MF_00320}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00320};; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit D n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZ09_HALMD
RNA polymerase insert
sw_12_scaffold_3469_8
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3458..3841)
DNA (384bp) protein (128aa)
30S ribosomal protein S11 n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CSH1_9EURY
30S ribosomal protein S11 {ECO:0000256|HAMAP-Rule:MF_01310}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbade
rps11p; 30S ribosomal protein S11P
sw_12_scaffold_3469_9
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3842..4366)
DNA (525bp) protein (175aa)
30S ribosomal protein S4 n=1 Tax=halophilic archaeon J07HX64 RepID=U1QVJ9_9EURY
30S ribosomal protein S4 {ECO:0000256|HAMAP-Rule:MF_01306, ECO:0000256|SAAS:SAAS00016650}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J
rps4p; 30S ribosomal protein S4P
sw_12_scaffold_3469_10
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(4368..4889)
DNA (522bp) protein (174aa)
30S ribosomal protein S13 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PFE3_9EURY
30S ribosomal protein S18e (S13p)
30S ribosomal protein S13 {ECO:0000256|HAMAP-Rule:MF_01315}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea
sw_12_scaffold_3469_trna_1
unknown

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comp(4909..4991)
DNA (83bp)
transferRNA
sw_12_scaffold_3469_11
halophilic archaeon J07HX5, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5252..5365)
DNA (114bp) protein (38aa)
Protein-export membrane protein SecD n=1 Tax=halophilic archaeon J07HX5 RepID=U1MWZ0_9EURY
Protein-export membrane protein SecD {ECO:0000256|HAMAP-Rule:MF_01463}; TaxID=1325472 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX5.;"
secD; preprotein translocase subunit SecD
Displaying 13 items

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