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sw_12_scaffold_3502

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_3502_1
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1..408
DNA (408bp) protein (136aa)
Serine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00176}; EC=6.1.1.11 {ECO:0000256|HAMAP-Rule:MF_00176};; Seryl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00176}; Seryl-tRNA(Ser/Sec) synthetase {ECO:0000
seryl-tRNA synthetase (EC:6.1.1.11)
Serine--tRNA ligase n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4IXJ8_9EURY
sw_12_scaffold_3502_2
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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750..1424
DNA (675bp) protein (225aa)
Uncharacterized protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PKK1_9EURY
conserved hypothetical protein (DUF47)
Uncharacterized protein {ECO:0000313|EMBL:ERJ05982.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL4
sw_12_scaffold_3502_3
unknown

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comp(1446..1664)
DNA (219bp) protein (73aa)

This feature has no annotations

sw_12_scaffold_3502_4
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1819..2316
DNA (498bp) protein (166aa)
hypothetical protein; K09140 pre-rRNA-processing protein TSR3 id=24616179 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Probable ribosome biogenesis protein K933_11836 {ECO:0000256|HAMAP-Rule:MF_01116}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.
hypothetical protein
sw_12_scaffold_3502_5
Halorubrum kocurii, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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2403..2552
DNA (150bp) protein (50aa)
LSU ribosomal protein L40E n=1 Tax=uncultured archaeon A07HR67 RepID=V4XYQ1_9ARCH
ribosomal protein L40e
50S ribosomal protein L40e {ECO:0000256|HAMAP-Rule:MF_00788}; TaxID=1230456 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum kocurii JCM 1
sw_12_scaffold_3502_6
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2626..2988)
DNA (363bp) protein (121aa)
Conserved hypothetical PIN domain protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PQ63_9EURY
conserved hypothetical PIN domain protein
Conserved hypothetical PIN domain protein {ECO:0000313|EMBL:CCQ33098.1}; PilT protein {ECO:0000313|EMBL:ERJ05035.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halob
sw_12_scaffold_3502_7
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(2985..3233)
DNA (249bp) protein (83aa)
Uncharacterized protein n=2 Tax=Haloquadratum walsbyi RepID=Q18EN0_HALWD
hypothetical protein
DUF217 family protein {ECO:0000313|EMBL:CAJ53593.2}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (strain D
sw_12_scaffold_3502_8
unknown

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3779..4618
DNA (840bp) protein (280aa)

This feature has no annotations

sw_12_scaffold_3502_9
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(5079..5684)
DNA (606bp) protein (202aa)
Beta-lactamase n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W3Z2_9EURY
beta-lactamase
Beta-lactamase {ECO:0000313|EMBL:AGN00812.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.;"
sw_12_scaffold_3502_10
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5877..6053
DNA (177bp) protein (59aa)
Death domain-associated protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PK43_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELZ29433.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
sw_12_scaffold_3502_11
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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6050..6535
DNA (486bp) protein (162aa)
UPF0215 protein HLRTI_000325/HTIA_1340 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PK44_9EURY
conserved hypothetical protein (DUF99)
UPF0215 protein HLRTI_000325 {ECO:0000256|HAMAP-Rule:MF_00582}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiama
sw_12_scaffold_3502_12
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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6558..8843
DNA (2286bp) protein (762aa)
Imidazole glycerol phosphate synthase subunit HisH {ECO:0000256|HAMAP-Rule:MF_00278}; EC=2.4.2.- {ECO:0000256|HAMAP-Rule:MF_00278};; IGP synthase glutamine amidotransferase subunit {ECO:0000256|HAMAP-
Imidazole glycerol phosphate synthase subunit HisH n=1 Tax=Halogranum salarium B-1 RepID=J3JFV0_9EURY
imidazole glycerol phosphate synthase subunit hisH
sw_12_scaffold_3502_13
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8875..9525
DNA (651bp) protein (217aa)
ABC transporter related n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NQ57_HALUD
ABC transporter
ABC transporter related {ECO:0000313|EMBL:ACV11801.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahensis (stra
sw_12_scaffold_3502_14
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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9907..11055
DNA (1149bp) protein (383aa)
Uncharacterized protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NZC5_HALMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV46811.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_12_scaffold_3502_15
Halorubrum sp. J07HR59, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11249..11464)
DNA (216bp) protein (72aa)
Uncharacterized protein id=24635181 bin=Halorubrum_J07HR59 species=Halorubrum sp. J07HR59 genus=Halorubrum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halorubrum_J07HR59
Uncharacterized protein {ECO:0000313|EMBL:ERH03215.1}; TaxID=1238428 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum sp. J07HR59.;"
Displaying 15 items

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