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sw_12_scaffold_1048

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Displaying 16 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_1048_1

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comp(358..804)
DNA (447bp) protein (149aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MPZ3_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN07455.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_12_scaffold_1048_2
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(773..1903)
DNA (1131bp) protein (377aa)
metE; 5-methyltetrahydropteroyltriglutamate/homocysteine S-methyltransferase (EC:2.1.1.14)
Methionine synthase n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CG39_9EURY
Methionine synthase {ECO:0000313|EMBL:EMA29767.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 6131.;"
sw_12_scaffold_1048_3
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1900..2904)
DNA (1005bp) protein (335aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MVS5_9EURY
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:EMA49711.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Hal
methionine synthase II (cobalamin-independent)
sw_12_scaffold_1048_4
Deinococcus maricopensis, Deinococcus, Deinococcales, Deinococci, Deinococcus-Thermus, Bacteria

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3072..3548
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Deinococcus maricopensis (strain DSM 21211 / LMG 22137 / NRRL B-23946 / LB-34) RepID=E8U968_DEIML
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADV67607.1}; TaxID=709986 species="Bacteria; Deinococcus-Thermus; Deinococci; Deinococcales; Deinococcaceae; Deinococcus.;" source="Deinococcus maricopensis (
sw_12_scaffold_1048_5
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(3652..4224)
DNA (573bp) protein (191aa)
Methyltransferase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MQ74_9EURY
Methyltransferase {ECO:0000313|EMBL:EMA47877.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DSM 53
HemK-related putative methylase
sw_12_scaffold_1048_6
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(4306..5232)
DNA (927bp) protein (309aa)
Probable ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rul
Probable ribosomal RNA small subunit methyltransferase A n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CU99_9EURY
ksgA; dimethyladenosine transferase
sw_12_scaffold_1048_7
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5311..5958)
DNA (648bp) protein (216aa)
RNA-binding protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M2L9_9EURY
RNA-binding protein {ECO:0000313|EMBL:EMA38859.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A6.;
RNA-binding protein
sw_12_scaffold_1048_8
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6067..6687)
DNA (621bp) protein (207aa)
DNA-directed RNA polymerase subunit F {ECO:0000313|EMBL:ELZ25451.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELZ25451.1};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteri
hypothetical protein (EC:2.7.7.6)
DNA-directed RNA polymerase subunit F n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CQD3_9EURY
sw_12_scaffold_1048_9
unknown

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7053..7286
DNA (234bp) protein (78aa)

This feature has no annotations

sw_12_scaffold_1048_10
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7684..7950)
DNA (267bp) protein (89aa)
Elongation factor 1-beta n=2 Tax=Haladaptatus paucihalophilus RepID=E7QS85_9EURY
Elongation factor 1-beta {ECO:0000256|HAMAP-Rule:MF_00043, ECO:0000256|SAAS:SAAS00044427}; Short=EF-1-beta {ECO:0000256|HAMAP-Rule:MF_00043};; aEF-1beta {ECO:0000256|HAMAP-Rule:MF_00043}; TaxID=797209
ef1B; elongation factor 1-beta
sw_12_scaffold_1048_11
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7952..8137)
DNA (186bp) protein (62aa)
Zn-ribbon RNA-binding protein n=2 Tax=Halococcus RepID=M0MQH5_9EURY
hypothetical protein
Zn-ribbon RNA-binding protein {ECO:0000313|EMBL:EMA49060.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodina
sw_12_scaffold_1048_12
halophilic archaeon J07HB67, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8271..9014
DNA (744bp) protein (248aa)
Dehydrogenase n=1 Tax=halophilic archaeon J07HB67 RepID=U1R008_9EURY
Dehydrogenase {ECO:0000313|EMBL:ERH11627.1}; TaxID=1085029 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HB67.;"
dehydrogenase of unknown specificity, short-chain alcohol dehydrogenase like protein
sw_12_scaffold_1048_13
unknown

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9096..9392
DNA (297bp) protein (99aa)

This feature has no annotations

sw_12_scaffold_1048_14
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(9495..11060)
DNA (1566bp) protein (522aa)
fdhA; formate dehydrogenase subunit alpha (EC:1.2.1.2)
Formate dehydrogenase subunit alpha n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0D1E7_9EURY
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:ELZ28492.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricu
sw_12_scaffold_1048_15
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11057..11560)
DNA (504bp) protein (168aa)
Formate dehydrogenase subunit alpha n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MYK4_9EURY
Formate dehydrogenase subunit alpha {ECO:0000313|EMBL:EMA49480.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thai
molybdopterin oxidoreductase
sw_12_scaffold_1048_16
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11602..11979)
DNA (378bp) protein (126aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LVP6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA37652.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
Displaying 16 items

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