ggKbase home page

sw_12_scaffold_327

Search features with annotation key words

Displaying items 1-30 of 33 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_327_1
unknown

Not on your lists

comp(5..334)
DNA (330bp) protein (110aa)

This feature has no annotations

sw_12_scaffold_327_2
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(890..1237)
DNA (348bp) protein (116aa)
Zinc finger SWIM domain-containing protein n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LT27_9EURY
Zinc finger SWIM domain-containing protein {ECO:0000313|EMBL:EMA36318.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma n
metal-binding protein
sw_12_scaffold_327_3
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1392..2564
DNA (1173bp) protein (391aa)
tRNA (guanine(26)-N(2))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00290}; EC=2.1.1.216 {ECO:0000256|HAMAP-Rule:MF_00290};; tRNA 2,2-dimethylguanosine-26 methyltransferase {ECO:0000256|HAMAP-Rule:
N(2),N(2)-dimethylguanosine tRNA methyltransferase (EC:2.1.1.32)
tRNA (guanine(26)-N(2))-dimethyltransferase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NC88_9EURY
sw_12_scaffold_327_4
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2655..3590
DNA (936bp) protein (312aa)
Ribonuclease BN n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0N2K3_HALMO
Ribonuclease BN {ECO:0000313|EMBL:EMA51359.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307.;"
ribonuclease BN
sw_12_scaffold_327_5
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3648..4457
DNA (810bp) protein (270aa)
Ribonuclease BN n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LQQ6_9EURY
Ribonuclease BN {ECO:0000313|EMBL:EMA35821.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A6.;"
hypothetical protein
sw_12_scaffold_327_6
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4518..6140
DNA (1623bp) protein (541aa)
Ribonuclease BN n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LVA7_9EURY
Ribonuclease BN {ECO:0000313|EMBL:EMA36314.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireducens JCM 10879.;"
ribonuclease BN
sw_12_scaffold_327_7
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6287..7243
DNA (957bp) protein (319aa)
PA-phosphatase like phosphoesterase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N7Q7_9EURY
PA-phosphatase like phosphoesterase {ECO:0000313|EMBL:EMA53901.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thai
phosphoesterase PA-phosphatase-related protein
sw_12_scaffold_327_8
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7225..8595)
DNA (1371bp) protein (457aa)
L-glutamine synthetase (EC:6.3.1.2)
Glutamine synthetase {ECO:0000256|RuleBase:RU004356}; EC=6.3.1.2 {ECO:0000256|RuleBase:RU004356};; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeomet
Glutamine synthetase n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NMJ2_HALBP
sw_12_scaffold_327_9
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8721..9179
DNA (459bp) protein (153aa)
Transcription regulator AsnC-type-like protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NC83_9EURY
Transcription regulator AsnC-type-like protein {ECO:0000313|EMBL:EMA55183.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halo
trh2; AsnC family transcriptional regulator
sw_12_scaffold_327_10
RBG_16_Deltaproteobacteria_49_23_curated, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9283..10488
DNA (1206bp) protein (402aa)
cystathionine gamma-lyase (EC:4.4.1.1); K01758 cystathionine gamma-lyase [EC:4.4.1.1] Tax=RBG_16_Deltaproteobacteria_49_23_curated
Cystathionine synthase/lyase (Cystathionine gamma-synthase, cystathionine gamma-lyase, cystathionine beta-lyase) n=2 Tax=Halobacterium salinarum RepID=B0R464_HALS3
cgs; cystathionine gamma-synthase
sw_12_scaffold_327_11
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10614..12566
DNA (1953bp) protein (651aa)
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=797209 species="Archaea; Eury
thrS; threonyl-tRNA synthetase (EC:6.1.1.3)
Threonine--tRNA ligase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QPH2_9EURY
sw_12_scaffold_327_12
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12878..13027)
DNA (150bp) protein (50aa)
50S ribosomal protein L40e n=2 Tax=Halococcus RepID=M0MF84_HALMO
50S ribosomal protein L40e {ECO:0000256|HAMAP-Rule:MF_00788}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinen
rpl40e; 50S ribosomal protein L40e
sw_12_scaffold_327_13
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13128..13694)
DNA (567bp) protein (189aa)
Probable ribosome biogenesis protein C447_04877 n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M3Z2_9EURY
hypothetical protein
Probable ribosome biogenesis protein C447_04877 {ECO:0000256|HAMAP-Rule:MF_01116}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source=
sw_12_scaffold_327_14
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13780..14106
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0E8Y1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ42854.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum DSM 11
hypothetical protein
sw_12_scaffold_327_15
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(14180..14818)
DNA (639bp) protein (213aa)
DSBA oxidoreductase n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M6B9_HALMO
DSBA oxidoreductase {ECO:0000313|EMBL:EMA41362.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307.;"
DSBA oxidoreductase
sw_12_scaffold_327_16
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14938..15495
DNA (558bp) protein (186aa)
Serine acetyltransferase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J6A6_HALJB
serine acetyltransferase
Serine acetyltransferase {ECO:0000313|EMBL:ADJ15824.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halalkalicoccus jeotga
sw_12_scaffold_327_17
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15559..15987)
DNA (429bp) protein (143aa)
Deoxycytidine triphosphate deaminase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N680_9EURY
Deoxycytidine triphosphate deaminase {ECO:0000313|EMBL:EMA52624.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sal
dCTP deaminase
sw_12_scaffold_327_18
unknown

Not on your lists

16100..16267
DNA (168bp) protein (56aa)

This feature has no annotations

sw_12_scaffold_327_19
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16453..17106)
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N163_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA51712.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
transcriptional regulator
sw_12_scaffold_327_20
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17235..18071)
DNA (837bp) protein (279aa)
Oxidoreductase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N4Y6_9EURY
Oxidoreductase {ECO:0000313|EMBL:EMA51760.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JCM 13552.;
yusZ4; short chain dehydrogenase/reductase
sw_12_scaffold_327_21
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18253..19005
DNA (753bp) protein (251aa)
Uncharacterized protein n=2 Tax=Haloarcula RepID=Q5V727_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV44619.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_12_scaffold_327_22
unknown

Not on your lists

19070..19357
DNA (288bp) protein (96aa)

This feature has no annotations

sw_12_scaffold_327_23
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19354..19791
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M5T7_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA39979.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
sw_12_scaffold_327_24
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19812..20651)
DNA (840bp) protein (280aa)
Endonuclease V {ECO:0000256|HAMAP-Rule:MF_00801}; EC=3.1.21.7 {ECO:0000256|HAMAP-Rule:MF_00801};; Deoxyinosine 3'endonuclease {ECO:0000256|HAMAP-Rule:MF_00801}; Deoxyribonuclease V {ECO:0000256|HAMAP-
deoxyribonuclease V (EC:3.1.21.7)
Endonuclease V n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MGQ6_9EURY
sw_12_scaffold_327_25
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20667..21587)
DNA (921bp) protein (307aa)
Rhomboid family protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MKV9_HALMO
Rhomboid family protein {ECO:0000313|EMBL:EMA46337.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
rhomboid family protein/GlpG-like protein
sw_12_scaffold_327_26
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21713..22147
DNA (435bp) protein (145aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MIR0_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA45582.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
sw_12_scaffold_327_27
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22144..23889
DNA (1746bp) protein (582aa)
PHP domain protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MEN3_9EURY
PHP domain protein {ECO:0000313|EMBL:EMA44217.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus DSM 5
PHP domain protein
sw_12_scaffold_327_28
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23886..24443
DNA (558bp) protein (186aa)
Conserved Archaeal protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PMA7_9EURY
conserved hypothetical protein (DUF82)
Conserved Archaeal protein {ECO:0000313|EMBL:ERJ05539.1}; Uncharacterized protein {ECO:0000313|EMBL:CCQ32873.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacte
sw_12_scaffold_327_29
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24482..25045)
DNA (564bp) protein (188aa)
Uncharacterized protein n=1 Tax=Halorubrum terrestre JCM 10247 RepID=M0DHW8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ33779.1}; TaxID=1227486 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum terrestre JCM 10247.
hypothetical protein
sw_12_scaffold_327_30
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25168..26388)
DNA (1221bp) protein (407aa)
Uncharacterized protein n=1 Tax=Halorubrum arcis JCM 13916 RepID=M0PME0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA71241.1}; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum arcis JCM 13916.;"
hypothetical protein
Displaying items 1-30 of 33 in total

View Taxonomy