ggKbase home page

sw_12_scaffold_561

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_561_1
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2..652
DNA (651bp) protein (217aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N8H8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA52950.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_12_scaffold_561_2
Halonotius sp. J07HN4, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(686..1669)
DNA (984bp) protein (328aa)
replication factor c small subunit; K04801 replication factor C small subunit id=24619443 bin=Halonotius_J07HN4 species=Halonotius sp. J07HN4 genus=Halonotius taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halonotius_J07HN4
Replication factor C small subunit {ECO:0000256|HAMAP-Rule:MF_01509}; Short=RFC small subunit {ECO:0000256|HAMAP-Rule:MF_01509};; Clamp loader small subunit {ECO:0000256|HAMAP-Rule:MF_01509}; TaxID=10
rfcA; replication factor C small subunit
sw_12_scaffold_561_3
Haloferax denitrificans, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1831..2025
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Haloferax denitrificans ATCC 35960 RepID=M0JC11_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA05908.1}; TaxID=662478 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax denitrificans ATCC 3596
hypothetical protein
sw_12_scaffold_561_4
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2043..2519
DNA (477bp) protein (159aa)
Acetyltransferase (Gnat) family protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M558_9EURY
Acetyltransferase (Gnat) family protein {ECO:0000313|EMBL:EMA40947.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
acetyltransferase (gnat) family protein
sw_12_scaffold_561_5
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2544..3926)
DNA (1383bp) protein (461aa)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MGC5_9EURY
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:EMA43749.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcu
phosphomannomutase
sw_12_scaffold_561_6

Not on your lists

4103..4660
DNA (558bp) protein (186aa)
Putative flavoprotein n=1 Tax=uncultured archaeon A07HR60 RepID=V4YKN2_9ARCH
Putative flavoprotein {ECO:0000313|EMBL:ESS12062.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
flavoprotein
sw_12_scaffold_561_7
Halorubrum lipolyticum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4684..4977)
DNA (294bp) protein (98aa)
Excinuclease ABC subunit C n=1 Tax=Halorubrum lipolyticum DSM 21995 RepID=M0NU95_9EURY
Excinuclease ABC subunit C {ECO:0000313|EMBL:EMA60180.1}; TaxID=1227482 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum lipolyticum DSM 2
excinuclease ABC subunit C
sw_12_scaffold_561_8
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4999..5157)
DNA (159bp) protein (53aa)
Small CPxCG-related zinc finger protein n=2 Tax=Halococcus RepID=M0MTT3_HALMO
Small CPxCG-related zinc finger protein {ECO:0000313|EMBL:EMA52870.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus
hypothetical protein
sw_12_scaffold_561_9
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5289..6065)
DNA (777bp) protein (259aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MH33_9EURY
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:EMA43745.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Ha
purE2; PurE family protein
sw_12_scaffold_561_10
Natrialba taiwanensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6210..6377
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Natrialba RepID=L9ZR38_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY88007.1}; TaxID=1230458 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba taiwanensis DSM 12281.;"
hypothetical protein
sw_12_scaffold_561_11
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6562..7926
DNA (1365bp) protein (455aa)
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7P229_HALMD
phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I
Phosphoglucomutase/phosphomannomutase alpha/beta/alpha domain I {ECO:0000313|EMBL:ACV47258.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrob
sw_12_scaffold_561_12
unknown

Not on your lists

8536..8715
DNA (180bp) protein (60aa)

This feature has no annotations

sw_12_scaffold_561_13
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9063..10514
DNA (1452bp) protein (484aa)
Uncharacterized protein n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W8V4_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN00964.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.
sw_12_scaffold_561_14
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10559..11053)
DNA (495bp) protein (165aa)
Phosphoesterase {ECO:0000256|RuleBase:RU362039}; EC=3.1.4.- {ECO:0000256|RuleBase:RU362039};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus
Phosphodiesterase, MJ0936 family protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MKP1_9EURY
phosphodiesterase, MJ0936 family
sw_12_scaffold_561_15
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11185..12666
DNA (1482bp) protein (494aa)
Initiation factor 2B related protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MIX6_9EURY
Initiation factor 2B related protein {ECO:0000313|EMBL:EMA45308.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sac
initiation factor 2B related protein
sw_12_scaffold_561_16
unknown

Not on your lists

12731..12871
DNA (141bp) protein (47aa)

This feature has no annotations

sw_12_scaffold_561_17
Intrasporangium chromatireducens, Intrasporangium, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

12885..13046
DNA (162bp) protein (54aa)
Putative ATP/GTP-binding protein n=1 Tax=Streptomyces griseus subsp. griseus (strain JCM 4626 / NBRC 13350) RepID=B1VXH3_STRGG
ATP-binding protein {ECO:0000313|EMBL:EWT07977.1}; TaxID=584657 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Intrasporangium.;" source="Intrasporangium chromatireducens Q5-1.;
ATP/GTP-binding protein
Displaying 17 items

View Taxonomy