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sw_12_scaffold_1074

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_12_scaffold_1074_1
Marchantia polymorpha, Marchantia, Marchantiales, Marchantiidae, Streptophyta, Viridiplantae

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1..267
DNA (267bp) protein (89aa)
Cytochrome c biogenesis protein CcsA n=1 Tax=Marchantia polymorpha RepID=CCSA_MARPO
Cytochrome c biogenesis protein CcsA {ECO:0000255|HAMAP-Rule:MF_01391}; TaxID=3197 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Marchantiophyta; Marchantiopsida; Marchantiidae; Marcha
cytochrome c-type biogenesis protein CcsB
sw_12_scaffold_1074_2
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

Not on your lists

336..926
DNA (591bp) protein (197aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
protease subunit of ATP-dependent protease (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pyramimonas parkeae RepID=C0JWZ4_9CHLO
sw_12_scaffold_1074_3
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

Not on your lists

1025..2551
DNA (1527bp) protein (509aa)
Photosystem II CP47 chlorophyll apoprotein n=1 Tax=Pyramimonas parkeae RepID=C0JWZ3_9CHLO
Photosystem II CP47 reaction center protein {ECO:0000256|HAMAP-Rule:MF_01495, ECO:0000256|RuleBase:RU004535}; PSII 47 kDa protein {ECO:0000256|HAMAP-Rule:MF_01495}; Protein CP-47 {ECO:0000256|HAMAP-Ru
photosystem II chlorophyll-binding protein CP47
sw_12_scaffold_1074_4
Volvox carteri, Volvox, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

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2567..2662
DNA (96bp) protein (32aa)
Photosystem II reaction center protein T {ECO:0000256|HAMAP-Rule:MF_00808}; Short=PSII-T {ECO:0000256|HAMAP-Rule:MF_00808};; TaxID=3068 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; C
sw_12_scaffold_1074_5
Pedinomonas minor, Pedinomonas, Pedinomonadales, Pedinophyceae, Chlorophyta, Viridiplantae

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2830..3060
DNA (231bp) protein (77aa)
Photosystem II reaction center protein H n=1 Tax=Pedinomonas minor RepID=C7BEL3_PEDMN
Photosystem II reaction center protein H {ECO:0000256|HAMAP-Rule:MF_00752}; Short=PSII-H {ECO:0000256|HAMAP-Rule:MF_00752};; TaxID=3159 species="Eukaryota; Viridiplantae; Chlorophyta; Pedinophyceae; P
psbH; photosystem II reaction center protein H
sw_12_scaffold_1074_6
unknown

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3071..3295
DNA (225bp) protein (75aa)

This feature has no annotations

sw_12_scaffold_1074_trna_1
unknown

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3259..3345
DNA (87bp)
transferRNA
sw_12_scaffold_1074_trna_2
unknown

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3466..3539
DNA (74bp)
transferRNA
sw_12_scaffold_1074_trna_3
unknown

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3572..3643
DNA (72bp)
transferRNA
sw_12_scaffold_1074_7
Ettlia pseudoalveolaris, Ettlia, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

Not on your lists

3818..4756
DNA (939bp) protein (313aa)
Apocytochrome f n=1 Tax=Micromonas sp. (strain RCC299 / NOUM17) RepID=C1KR40_MICSR
Cytochrome f {ECO:0000256|HAMAP-Rule:MF_00610}; Flags: Precursor;; TaxID=3102 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadales incertae sedis; Ettlia
apocytochrome f
sw_12_scaffold_1074_8
Lyngbya sp. PCC 8106, Lyngbya, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists


4947..5138
DNA (192bp) protein (64aa)
30S ribosomal protein S18 n=2 Tax=Lyngbya RepID=A0YR62_LYNSP
30S ribosomal protein S18 {ECO:0000256|HAMAP-Rule:MF_00270}; TaxID=313612 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Lyngbya.;" source="Lyngbya sp. (strain PCC 8106) (Ly
rpsR; 30S ribosomal protein S18
sw_12_scaffold_1074_9
Guillardia theta, Guillardia, Pyrenomonadales, Cryptophyta, Eukaryota

Not on your lists

5291..6913
DNA (1623bp) protein (541aa)
DNA-directed RNA polymerase subunit beta'' {ECO:0000255|HAMAP-Rule:MF_01324}; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01324};; PEP {ECO:0000255|HAMAP-Rule:MF_01324}; Plastid-encoded RNA polymerase subun
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'' n=1 Tax=Guillardia theta RepID=RPOC2_GUITH
sw_12_scaffold_1074_10
Nephroselmis astigmatica, Nephroselmis, Nephroselmidophyceae, Chlorophyta, Viridiplantae

Not on your lists

6891..7874
DNA (984bp) protein (328aa)
DNA-directed RNA polymerase subunit beta'' {ECO:0000256|HAMAP-Rule:MF_01324}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01324};; PEP {ECO:0000256|HAMAP-Rule:MF_01324}; Plastid-encoded RNA polymerase subun
DNA-directed RNA polymerase n=1 Tax=Euglena viridis RepID=M1EUS9_EUGVI
rpoC2; DNA-directed RNA polymerase subunit beta'
sw_12_scaffold_1074_trna_4
unknown

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8048..8131
DNA (84bp)
transferRNA
sw_12_scaffold_1074_11
Monomastix sp. OKE-1, Monomastix, Monomastigales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

8204..8446
DNA (243bp) protein (81aa)
Cytochrome b559 subunit alpha n=1 Tax=Monomastix sp. (strain OKE-1) RepID=C0JWM0_MONSK
Cytochrome b559 subunit alpha {ECO:0000256|HAMAP-Rule:MF_00642, ECO:0000256|RuleBase:RU004529}; PSII reaction center subunit V {ECO:0000256|HAMAP-Rule:MF_00642, ECO:0000256|RuleBase:RU004529}; TaxID=1
cytochrome b559, subunit alpha
sw_12_scaffold_1074_12
Roya anglica, Roya, Zygnematales, Zygnemophyceae, Streptophyta, Viridiplantae

Not on your lists

8635..8757
DNA (123bp) protein (41aa)
Photosystem II reaction center protein J n=1 Tax=Cicer arietinum RepID=B5LMN8_CICAR
Photosystem II reaction center protein J {ECO:0000256|HAMAP-Rule:MF_01305}; Short=PSII-J {ECO:0000256|HAMAP-Rule:MF_01305};; TaxID=43943 species="Eukaryota; Viridiplantae; Streptophyta; Zygnemophyceae
PsbJ
sw_12_scaffold_1074_13
Pabia signiensis, Pabia, Prasiolales, Trebouxiophyceae, Chlorophyta, Viridiplantae

Not on your lists

8996..9199
DNA (204bp) protein (68aa)
Cytochrome b6-f complex subunit 5 n=2 Tax=Chara vulgaris RepID=PETG_CHAVU
Cytochrome b6-f complex subunit 5 {ECO:0000256|HAMAP-Rule:MF_00432}; Cytochrome b6-f complex subunit PetG {ECO:0000256|HAMAP-Rule:MF_00432}; Cytochrome b6-f complex subunit V {ECO:0000256|HAMAP-Rule:M
Cytochrome B6-F complex subunit 5
sw_12_scaffold_1074_trna_5
unknown

Not on your lists

9383..9453
DNA (71bp)
transferRNA
sw_12_scaffold_1074_trna_11
unknown

Not on your lists

comp(9626..9697)
DNA (72bp)
transferRNA
sw_12_scaffold_1074_trna_10
unknown

Not on your lists

comp(11289..11360)
DNA (72bp)
transferRNA
sw_12_scaffold_1074_trna_9
unknown

Not on your lists

comp(11373..11445)
DNA (73bp)
transferRNA
sw_12_scaffold_1074_trna_8
unknown

Not on your lists

comp(11474..11556)
DNA (83bp)
transferRNA
sw_12_scaffold_1074_trna_7
unknown

Not on your lists

comp(11581..11654)
DNA (74bp)
transferRNA
sw_12_scaffold_1074_trna_6
unknown

Not on your lists

comp(11670..11741)
DNA (72bp)
transferRNA
sw_12_scaffold_1074_14
Oscillatoria nigro-viridis, Oscillatoria, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

Not on your lists

comp(11872..12117)
DNA (246bp) protein (82aa)
Photosystem I iron-sulfur center {ECO:0000256|HAMAP-Rule:MF_01303}; EC=1.97.1.12 {ECO:0000256|HAMAP-Rule:MF_01303};; 9 kDa polypeptide {ECO:0000256|HAMAP-Rule:MF_01303}; PSI-C {ECO:0000256|HAMAP-Rule:
Photosystem I iron-sulfur center n=1 Tax=Oscillatoria nigro-viridis PCC 7112 RepID=K9VGP1_9CYAN
Photosystem I iron-sulfur center
sw_12_scaffold_1074_15
Monomastix sp. OKE-1, Monomastix, Monomastigales, Mamiellophyceae, Chlorophyta, Viridiplantae

Not on your lists

comp(12176..12364)
DNA (189bp) protein (63aa)
Photosystem I assembly protein Ycf3 n=1 Tax=Monomastix sp. (strain OKE-1) RepID=C0JWJ5_MONSK
Photosystem I assembly protein Ycf3 {ECO:0000256|HAMAP-Rule:MF_00439}; TaxID=141716 species="Eukaryota; Viridiplantae; Chlorophyta; prasinophytes; Mamiellophyceae; Monomastigales; Monomastigaceae; Mon
ycf3; photosystem I assembly protein Ycf3
Displaying 26 items

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