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sw_4_scaffold_419

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Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_419_1
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

comp(2..199)
DNA (198bp) protein (66aa)
PAAR motif-containing protein n=1 Tax=Aminicenantes bacterium SCGC AAA252-F08 RepID=UPI0003B6E056
PAAR repeat-containing protein Tax=RBG_13_Aminicenantes_59_9_curated
PAAR repeat-containing protein
sw_4_scaffold_419_2
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(206..730)
DNA (525bp) protein (175aa)
Tax=RBG_16_Ignavibacteria_34_14_curated
sw_4_scaffold_419_3
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(902..3043)
DNA (2142bp) protein (714aa)
Rhs element Vgr protein n=1 Tax=Desulfocapsa sulfexigens (strain DSM 10523 / SB164P1) RepID=M1NI19_DESSD
Rhs element Vgr protein Tax=RBG_16_Ignavibacteria_34_14_curated
Rhs element Vgr protein
sw_4_scaffold_419_4
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(3183..5870)
DNA (2688bp) protein (896aa)
AAA ATPase n=1 Tax=alpha proteobacterium BAL199 RepID=A8TPA7_9PROT
type VI secretion ATPase, ClpV1 family Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
type VI secretion ATPase, ClpV1 family
sw_4_scaffold_419_5
Pelagibaca bermudensis, Pelagibaca, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6129..6392)
DNA (264bp) protein (88aa)
Uncharacterized protein {ECO:0000313|EMBL:EAU46654.1}; TaxID=314265 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pelagibaca.;" source="Pelagibaca bermuden
sw_4_scaffold_419_6
Burkholderia glathei, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7155..8930)
DNA (1776bp) protein (592aa)
Type VI secretion protein, VC_A0110 family n=1 Tax=Burkholderia ambifaria (strain MC40-6) RepID=B1Z0K3_BURA4
Protein ImpG/VasA {ECO:0000313|EMBL:CDY76728.1}; Type VI secretion protein ImpG {ECO:0000313|EMBL:KDR38520.1}; TaxID=60547 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkh
type VI secretion protein
sw_4_scaffold_419_7
Geoalkalibacter subterraneus, Geoalkalibacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9009..9428)
DNA (420bp) protein (140aa)
Uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BEV5_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AJF07922.1}; TaxID=483547 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae; Geoalkalibacter.;" source="Geoalkalibact
sw_4_scaffold_419_8
Gynuella sunshinyii, Gynuella, Oceanospirillales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9500..9985)
DNA (486bp) protein (162aa)
Secreted protein Hcp n=1 Tax=Reinekea blandensis MED297 RepID=A4BEV6_9GAMM
hemolysin-coregulated protein (uncharacterized)
Hemolysin-coregulated protein (Uncharacterized) {ECO:0000313|EMBL:AJQ93825.1}; TaxID=1445510 species="Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; unclassified Oceanospirillales;
sw_4_scaffold_419_9
Neisseria sicca, Neisseria, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10073..11608)
DNA (1536bp) protein (512aa)
Type VI secretion protein, EvpB/VC_A0108 family n=2 Tax=Neisseria sicca RepID=C6M7Z8_NEISI
Type VI secretion protein, EvpB/VC_A0108 family {ECO:0000313|EMBL:EIG29464.1}; TaxID=1095748 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Neisseria.;" source="Ne
type VI secretion protein
sw_4_scaffold_419_10
Snodgrassella alvi, Snodgrassella, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11702..12229)
DNA (528bp) protein (176aa)
hypothetical protein n=1 Tax=Enterobacteriaceae bacterium LSJC7 RepID=UPI000374EF3B
Uncharacterized protein ImpB
Uncharacterized protein {ECO:0000313|EMBL:KEQ01373.1}; TaxID=1385367 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Neisseriaceae; Snodgrassella.;" source="Snodgrassella alvi SCG
sw_4_scaffold_419_11
Geobacter metallireducens, Geobacter, Desulfuromonadales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12181..14019)
DNA (1839bp) protein (613aa)
Type VI secretion system DUF2094 and ImpA-related domain protein n=2 Tax=Geobacter metallireducens RepID=Q39Z04_GEOMG
type VI secretion system protein
Type VI secretion system DUF2094 and ImpA-related domain protein {ECO:0000313|EMBL:ABB30520.1}; TaxID=269799 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Geobacteraceae;
sw_4_scaffold_419_12
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(14052..15032)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEN9_9BACT
hypothetical protein; K11890 type VI secretion system protein ImpM Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
hypothetical protein
sw_4_scaffold_419_13
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

comp(15193..18858)
DNA (3666bp) protein (1222aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEN8_9BACT
hypothetical protein; K11891 type VI secretion system protein ImpL Tax=RBG_13_Aminicenantes_59_9_curated
hypothetical protein
sw_4_scaffold_419_14
RBG_16_Ignavibacteria_34_14_curated, Ignavibacteriales, Ignavibacteria, Ignavibacteriae, Bacteria

Not on your lists

comp(18865..19599)
DNA (735bp) protein (245aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEN7_9BACT
hypothetical protein; K11892 type VI secretion system protein ImpK Tax=RBG_16_Ignavibacteria_34_14_curated
hypothetical protein
sw_4_scaffold_419_15
RBG_13_Aminicenantes_59_9_curated, Aminicenantes, Bacteria

Not on your lists

comp(19779..21140)
DNA (1362bp) protein (454aa)
Uncharacterized protein n=1 Tax=Candidatus Nitrospira defluvii RepID=D8PEN6_9BACT
hypothetical protein; K11893 type VI secretion system protein ImpJ Tax=RBG_13_Aminicenantes_59_9_curated
hypothetical protein
sw_4_scaffold_419_16
Pseudoalteromonas marina, Pseudoalteromonas, Alteromonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21428..21898)
DNA (471bp) protein (157aa)
Type VI secretion system protein VasD n=3 Tax=Pseudoalteromonas RepID=G7EDF9_9GAMM
Type VI secretion lipoprotein {ECO:0000313|EMBL:ERG24566.1}; TaxID=1117316 species="Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Pseudoalteromonadaceae; Pseudoalteromonas.;" source=
sw_4_scaffold_419_17
RLO_Nitrospirae_42_9, Nitrospirae, Bacteria

Not on your lists

comp(21962..23143)
DNA (1182bp) protein (394aa)
signal peptide protein n=1 Tax=Salisaeta longa RepID=UPI0003B6625A
hypothetical protein; K11894 type VI secretion system protein ImpI Tax=RifCSPlowO2_12_Nitrospirae_42_9_curated
hypothetical protein
sw_4_scaffold_419_18
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(23337..25769)
DNA (2433bp) protein (811aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B7A4D3
protein kinase
Protein kinase {ECO:0000313|EMBL:AHG88161.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
sw_4_scaffold_419_19
Gemmatimonas aurantiaca, Gemmatimonas, Gemmatimonadales, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(25798..26385)
DNA (588bp) protein (196aa)
RNA polymerase sigma 70 n=1 Tax=Salisaeta longa RepID=UPI0003B6720F
sigma factor, ECF-like family protein
Sigma factor, ECF-like family protein {ECO:0000313|EMBL:BAH40042.1}; TaxID=379066 species="Bacteria; Gemmatimonadetes; Gemmatimonadales; Gemmatimonadaceae; Gemmatimonas.;" source="Gemmatimonas auranti
sw_4_scaffold_419_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26834..27421)
DNA (588bp) protein (196aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B43FD5
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC44527.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_419_21
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(27594..28769)
DNA (1176bp) protein (392aa)
Aminotransferase class V n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MG58_RHOM4
class V aminotransferase
Aminotransferase class V {ECO:0000313|EMBL:ACY47614.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus mar
sw_4_scaffold_419_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28884..29327
DNA (444bp) protein (148aa)
N-acetyltransferase GCN5 n=1 Tax=Salisaeta longa RepID=UPI0003B68D63
acetyltransferase
Acetyltransferase, GNAT family {ECO:0000313|EMBL:ABC45899.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibact
sw_4_scaffold_419_23
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(29564..30772)
DNA (1209bp) protein (403aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; Flags: Precursor;; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incerta
PpiC-type peptidyl-prolyl cis-trans isomerase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SGR7_RHOMR
PpiC-type peptidyl-prolyl cis-trans isomerase
sw_4_scaffold_419_trna_1
unknown

Not on your lists

31040..31114
DNA (75bp)
transferRNA
sw_4_scaffold_419_24
Thermacetogenium phaeum, Thermacetogenium, Thermoanaerobacterales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31096..31368)
DNA (273bp) protein (91aa)
Uncharacterized protein {ECO:0000313|EMBL:AFV10459.1}; TaxID=1089553 species="Bacteria; Firmicutes; Clostridia; Thermoanaerobacterales; Thermoanaerobacteraceae; Thermacetogenium.;" source="Thermacetog
sw_4_scaffold_419_25
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(31650..31937)
DNA (288bp) protein (96aa)
Bacteriophage integrase n=1 Tax=Cupriavidus basilensis OR16 RepID=H1SJ20_9BURK
Bacteriophage integrase {ECO:0000313|EMBL:EHP37483.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basile
integrase family protein
Displaying 26 items

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