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sw_4_scaffold_60

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_60_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2..1249
DNA (1248bp) protein (416aa)
Chaperone clpB n=2 Tax=Salinibacter ruber RepID=D5HD65_SALRM
clpB; Chaperone clpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
sw_4_scaffold_60_2
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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1456..1827
DNA (372bp) protein (124aa)
hypothetical protein
hypothetical protein id=24658731 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC45410.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_60_3
unknown

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1921..2028
DNA (108bp) protein (36aa)

This feature has no annotations

sw_4_scaffold_60_4
unknown

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2029..2406
DNA (378bp) protein (126aa)

This feature has no annotations

sw_4_scaffold_60_trna_1
unknown

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2450..2523
DNA (74bp)
transferRNA
sw_4_scaffold_60_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2632..4599
DNA (1968bp) protein (656aa)
thrS; threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3] id=24658750 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:000
thrS; threonyl-tRNA synthetase
sw_4_scaffold_60_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

4843..5301
DNA (459bp) protein (153aa)
infC; translation initiation factor IF-3
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
infC; translation initiation factor IF-3; K02520 translation initiation factor IF-3 id=24658751 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_4_scaffold_60_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


5497..5694
DNA (198bp) protein (66aa)
50S ribosomal protein L35 n=2 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=RL35_SALRD
hypothetical protein
50S ribosomal protein L35 {ECO:0000255|HAMAP-Rule:MF_00514}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_4_scaffold_60_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


5845..6192
DNA (348bp) protein (116aa)
50S ribosomal protein L20 n=2 Tax=Salinibacter ruber RepID=RL20_SALRD
rplT; 50S ribosomal protein L20
50S ribosomal protein L20 {ECO:0000255|HAMAP-Rule:MF_00382}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacte
sw_4_scaffold_60_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6858..7535)
DNA (678bp) protein (226aa)
OmpA family protein
OmpA family protein id=24657196 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
OmpA family protein {ECO:0000313|EMBL:ABC44333.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (s
sw_4_scaffold_60_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(7811..8983)
DNA (1173bp) protein (391aa)
Microsomal dipeptidase {ECO:0000313|EMBL:CBH23388.1}; EC=3.4.13.19 {ECO:0000313|EMBL:CBH23388.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermacea
Microsomal dipeptidase n=2 Tax=Salinibacter ruber RepID=D5H5T3_SALRM
microsomal dipeptidase
sw_4_scaffold_60_11
Salinisphaera shabanensis, Salinisphaera, Salinisphaerales, Gammaproteobacteria, Proteobacteria, Bacteria

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9466..10050
DNA (585bp) protein (195aa)
Uncharacterized protein n=1 Tax=Salinisphaera shabanensis E1L3A RepID=U2EJE0_9GAMM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERJ18432.1}; TaxID=1033802 species="Bacteria; Proteobacteria; Gammaproteobacteria; Salinisphaerales; Salinisphaeraceae; Salinisphaera.;" source="Salinisphaera
sw_4_scaffold_60_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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10624..11346
DNA (723bp) protein (241aa)
LuxR family transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B36AC2
two component LuxR family transcriptional regulator
Two component transcriptional regulator, LuxR family {ECO:0000313|EMBL:AEN73606.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus
sw_4_scaffold_60_13
Phaeodactylibacter xiamenensis, Phaeodactylibacter, Sphingobacteriales, Sphingobacteriia, Bacteroidetes, Bacteria

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comp(11525..12253)
DNA (729bp) protein (243aa)
UPI0003A26DF1 related cluster n=1 Tax=unknown RepID=UPI0003A26DF1
Uncharacterized protein {ECO:0000313|EMBL:KGE87201.1}; TaxID=1524460 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Saprospiraceae; Phaeodactylibacter.;" source="Phaeodactylib
hypothetical protein
sw_4_scaffold_60_14
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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12676..12897
DNA (222bp) protein (74aa)
hypothetical protein id=12555060 bin=CNBR_ACIDO species=Hydrocarboniphaga effusa genus=Hydrocarboniphaga taxon_order=Xanthomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=CNBR_ACIDO organism_group=Acidobacteria organism_desc=why is coverage listed as 1?
Uncharacterized protein {ECO:0000313|EMBL:EIT72047.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboni
hypothetical protein
sw_4_scaffold_60_15
Candidatus Koribacter versatilis, Candidatus Koribacter, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

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13114..15534
DNA (2421bp) protein (807aa)
Transcriptional regulatory protein-like protein n=1 Tax=Koribacter versatilis (strain Ellin345) RepID=Q1IIZ5_KORVE
transcriptional regulatory protein-like
Transcriptional regulatory protein-like protein {ECO:0000313|EMBL:ABF43155.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Kori
sw_4_scaffold_60_16
Coprinopsis cinerea, Coprinopsis, Agaricales, Agaricomycetidae, Basidiomycota, Fungi

Not on your lists

comp(15659..16213)
DNA (555bp) protein (185aa)
hypothetical protein n=1 Tax=Chlorogloeopsis RepID=UPI0002E5320D
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EAU86128.1}; TaxID=240176 species="Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Agaricomycetidae; Agaricales; Psathyrellaceae; C
sw_4_scaffold_60_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16666..17931
DNA (1266bp) protein (422aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B653DB
signal transduction histidine kinase
sw_4_scaffold_60_18
Ochrobactrum sp. CDB2, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18255..18473)
DNA (219bp) protein (73aa)
CsbD family protein n=1 Tax=Ochrobactrum sp. CDB2 RepID=M3K9Q6_9RHIZ
CsbD family protein {ECO:0000313|EMBL:EMG51940.1}; TaxID=360313 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum sp. CDB2.;"
protein yjbJ
sw_4_scaffold_60_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18808..19536
DNA (729bp) protein (243aa)
transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B383B7
alkaline phosphatase synthesis transcriptional regulatory protein PhoP
Alkaline phosphatase synthesis transcriptional regulatory proteinphoP {ECO:0000313|EMBL:ABC44211.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermac
sw_4_scaffold_60_20
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20247..22301
DNA (2055bp) protein (685aa)
Glycogen phosphorylase {ECO:0000313|EMBL:CBH23000.1}; EC=2.4.1.1 {ECO:0000313|EMBL:CBH23000.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
Glycogen phosphorylase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H4P5_SALRM
glgP; glycogen phosphorylase
sw_4_scaffold_60_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

22588..22926
DNA (339bp) protein (113aa)
Integrase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7J1_SALRM
integrase
Integrase {ECO:0000313|EMBL:CBH23996.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain M8).
sw_4_scaffold_60_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(22907..25507)
DNA (2601bp) protein (867aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S6F8_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC43937.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_60_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

25739..25876
DNA (138bp) protein (46aa)
Putative phosphate acetyltransferase/enoyl-CoA hydratase fusion protein {ECO:0000313|EMBL:CBH22991.1}; EC=2.3.1.8 {ECO:0000313|EMBL:CBH22991.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bactero
maoC; phosphate acetyltransferase
maoC; phosphate acetyltransferase id=24656882 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Displaying 24 items

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