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SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 201-250 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_19198
Species: Haloarcula californiae (50%)
2 1003 bp 71.68 10.77 100.80
sw_4_scaffold_19112
Species: Natronomonas pharaonis (100%)
2 1006 bp 63.42 19.58 100.79
sw_4_scaffold_18725
Species: Halococcus salifodinae (50%)
2 1024 bp 69.53 17.68 100.78
sw_4_scaffold_18408 3 1039 bp 60.35 13.38 100.77
sw_4_scaffold_18280
Species: Natronomonas moolapensis (100%)
3 1045 bp 69.57 28.90 100.77
sw_4_scaffold_15664
Species: Salinibacter ruber (100%)
2 1185 bp 66.33 6.84 100.76
sw_4_scaffold_11928 3 1462 bp 53.97 7.66 100.75
sw_4_scaffold_15341
Species: Natronomonas pharaonis (100%)
2 1206 bp 69.98 23.13 100.75
sw_4_scaffold_13200
Species: Halosimplex carlsbadense (100%)
2 1352 bp 63.17 10.36 100.74
sw_4_scaffold_11178
Order: Halobacteriales (50%)
4 1531 bp 66.43 11.63 100.72
sw_4_scaffold_20736
Species: Halococcus saccharolyticus (66.67%)
3 1263 bp 66.98 19.79 100.71
sw_4_scaffold_10806
Species: Halostagnicola larsenii (66.67%)
3 1567 bp 64.33 35.55 100.70
sw_4_scaffold_16197
Species: Natronomonas pharaonis (50%)
2 1153 bp 77.80 47.88 100.69
sw_4_scaffold_7408
Species: Haloferax mediterranei (50%)
2 2029 bp 61.61 39.48 100.69
sw_4_scaffold_18853 3 1019 bp 55.64 6.38 100.69
sw_4_scaffold_18714
Species: Natronomonas moolapensis (100%)
2 1025 bp 71.22 32.20 100.68
sw_4_scaffold_18472
Species: Rubrobacter radiotolerans (50%)
2 1037 bp 39.73 3.66 100.68
sw_4_scaffold_12709
Species: Natronomonas pharaonis (50%)
4 2372 bp 70.19 16.82 100.68
sw_4_scaffold_15378
Species: Halosimplex carlsbadense (100%)
2 1204 bp 66.86 34.14 100.66
sw_4_scaffold_8895
Species: Halococcus hamelinensis (50%)
2 2599 bp 70.10 103.16 100.65
sw_4_scaffold_14950
Species: Halobiforma nitratireducens (50%)
2 1231 bp 58.65 8.69 100.65
sw_4_scaffold_17538
Species: Haloarcula vallismortis (50%)
2 1082 bp 69.32 12.85 100.65
sw_4_scaffold_11005
Species: Halorubrum tebenquichense (50%)
2 1547 bp 73.50 23.85 100.65
sw_4_scaffold_7473
Species: Haloarcula argentinensis (50%)
4 2018 bp 64.52 6.64 100.64
sw_4_scaffold_17439
Species: Haladaptatus paucihalophilus (50%)
2 1088 bp 62.96 8.09 100.64
sw_4_scaffold_14669
Species: Haladaptatus paucihalophilus (50%)
2 1249 bp 50.12 5.12 100.64
sw_4_scaffold_10826
Species: R_RIF_OD1_08_38_39 (50%)
2 1565 bp 45.56 5.43 100.64
sw_4_scaffold_9399
Order: Halobacteriales (100%)
3 1723 bp 69.24 22.00 100.64
sw_4_scaffold_4878 4 3032 bp 42.38 4.45 100.63
sw_4_scaffold_14135
Species: Halococcus salifodinae (66.67%)
3 1282 bp 71.37 23.48 100.62
sw_4_scaffold_4193
Species: Haloferax sp. ATCC BAA-645 (50%)
4 2889 bp 57.74 7.27 100.62
sw_4_scaffold_14068 3 1288 bp 45.26 11.49 100.62
sw_4_scaffold_16621
Genus: Haloferax (66.67%)
3 1130 bp 68.41 8.67 100.62
sw_4_scaffold_16337 3 1145 bp 59.13 13.71 100.61
sw_4_scaffold_16175
Species: R_OD1_48_14 (50%)
2 1154 bp 52.25 9.27 100.61
sw_4_scaffold_8542
Order: Halobacteriales (50%)
4 1846 bp 67.12 14.90 100.60
sw_4_scaffold_12791
Species: Halococcus salifodinae (100%)
2 1384 bp 68.50 38.87 100.58
sw_4_scaffold_12822
Order: Halobacteriales (50%)
4 2422 bp 65.07 8.55 100.58
sw_4_scaffold_14275
Order: Haloferacales (66.67%)
3 1733 bp 67.80 16.91 100.58
sw_4_scaffold_15217
Species: Halococcus salifodinae (100%)
2 1214 bp 69.52 19.44 100.58
sw_4_scaffold_18306
Species: Haloarcula sp. CBA1115 (100%)
2 1044 bp 54.98 6.51 100.57
sw_4_scaffold_10233 3 2106 bp 62.73 8.36 100.57
sw_4_scaffold_7006
Species: Arthrospira platensis (50%)
2 2106 bp 52.90 6.22 100.57
sw_4_scaffold_17979
Species: Halorubrum californiense (100%)
2 1059 bp 53.45 8.40 100.57
sw_4_scaffold_13158
Species: Natrialba asiatica (50%)
2 1984 bp 64.92 9.32 100.55
sw_4_scaffold_17077
Species: Marinobacter sp. ES-1 (50%)
2 1107 bp 55.47 4.52 100.54
sw_4_scaffold_11763 5 1477 bp 61.48 14.22 100.54
sw_4_scaffold_17021
Species: Natronomonas pharaonis (50%)
2 1110 bp 73.87 27.66 100.54
sw_4_scaffold_13833
Species: Halosimplex carlsbadense (100%)
3 1304 bp 71.40 30.29 100.54
sw_4_scaffold_13779
Species: uncultured archaeon A07HB70 (50%)
2 1307 bp 57.15 10.71 100.54
Displaying items 201-250 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.