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SW_4_UNK

In projects: SW_4

Metagenomic Context

METAGENOME

Properties

Avg. coverage: 21.53 Longest contig: 118.51 Kbp Bin length: 43.57 Mbp GC content: 60.40 %
Contigs count: 16501 Features count: 56802 rRNAs count: 13 tRNAs count: 589

Genome completeness

megabin RP 51 / 55 MC: 43 BSCG 44 / 51 MC: 35 ASCG 38 / 38 MC: 38
Displaying items 251-300 of 16501 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_16784
Genus: Halococcus (66.67%)
3 1122 bp 69.79 28.79 100.54
sw_4_scaffold_8021 3 2620 bp 51.22 6.95 100.53
sw_4_scaffold_16733
Species: Halosimplex carlsbadense (100%)
2 1125 bp 68.18 14.84 100.53
sw_4_scaffold_22519
Order: Halobacteriales (66.67%)
3 1319 bp 67.25 11.75 100.53
sw_4_scaffold_13584
Species: Halorubrum californiense (50%)
2 1322 bp 74.89 23.07 100.53
sw_4_scaffold_7925
Species: Naegleria gruberi (66.67%)
3 2480 bp 24.31 6.01 100.52
sw_4_scaffold_13277
Species: Halococcus salifodinae (50%)
2 1346 bp 59.96 8.02 100.52
sw_4_scaffold_13248
Species: Haloferax sp. Arc-Hr (50%)
2 1349 bp 58.64 7.71 100.52
sw_4_scaffold_16102
Species: Haloarcula vallismortis (50%)
2 1158 bp 57.51 8.29 100.52
sw_4_scaffold_16013
Species: Halobacterium salinarum (100%)
2 1164 bp 69.24 7.90 100.52
sw_4_scaffold_15551
Species: Natronococcus jeotgali (50%)
2 1194 bp 57.37 5.61 100.50
sw_4_scaffold_27276 3 1215 bp 42.22 5.35 100.49
sw_4_scaffold_23005 4 1427 bp 65.94 7.92 100.49
sw_4_scaffold_17083 4 1648 bp 71.66 9.53 100.49
sw_4_scaffold_3970
Species: Halococcus salifodinae (100%)
2 2986 bp 67.58 44.44 100.47
sw_4_scaffold_17812
Species: Haloarcula marismortui (50%)
2 1069 bp 67.63 7.39 100.47
sw_4_scaffold_17691
Species: Halosimplex carlsbadense (100%)
2 1075 bp 70.23 10.88 100.47
sw_4_scaffold_17619
Class: Halobacteria (60%)
5 1078 bp 64.29 11.32 100.46
sw_4_scaffold_13945
Species: Halosimplex carlsbadense (100%)
2 1296 bp 59.41 5.40 100.46
sw_4_scaffold_17572 4 1081 bp 50.23 4.81 100.46
sw_4_scaffold_6705
Class: Halobacteria (66.67%)
3 2165 bp 73.03 13.72 100.46
sw_4_scaffold_17394
Species: Halosimplex carlsbadense (100%)
2 1090 bp 67.06 14.77 100.46
sw_4_scaffold_2096
Species: Halococcus saccharolyticus (60%)
5 4226 bp 60.88 11.64 100.45
sw_4_scaffold_6448
Class: Deltaproteobacteria (75%)
4 2225 bp 59.55 9.53 100.45
sw_4_scaffold_8752
Species: Haloferax volcanii (100%)
2 1816 bp 57.76 12.11 100.44
sw_4_scaffold_16538
Species: Natronorubrum bangense (66.67%)
3 1135 bp 48.11 4.41 100.44
sw_4_scaffold_16297
Species: halophilic archaeon DL31 (50%)
2 1147 bp 70.18 18.13 100.44
sw_4_scaffold_6879
Species: Natronomonas moolapensis (50%)
4 2127 bp 68.03 22.00 100.42
sw_4_scaffold_15318
Species: Flavobacterium reichenbachii (50%)
2 1207 bp 60.89 5.47 100.41
sw_4_scaffold_30737
Species: Haloarcula californiae (100%)
2 1210 bp 59.59 9.17 100.41
sw_4_scaffold_9576
Genus: Halococcus (66.67%)
3 1700 bp 66.53 24.47 100.41
sw_4_scaffold_22202
Species: Haladaptatus paucihalophilus (50%)
2 1467 bp 75.80 22.63 100.41
sw_4_scaffold_9320
Species: Halococcus saccharolyticus (50%)
2 1733 bp 70.74 15.18 100.40
sw_4_scaffold_14714
Species: Halogranum salarium (50%)
2 1246 bp 67.98 6.02 100.40
sw_4_scaffold_4987
Order: Halobacteriales (50%)
4 4258 bp 66.84 12.96 100.40
sw_4_scaffold_14572
Species: Halosimplex carlsbadense (100%)
3 1255 bp 69.00 15.14 100.40
sw_4_scaffold_19185
Species: Natronomonas pharaonis (50%)
2 1004 bp 72.21 13.65 100.40
sw_4_scaffold_19096 2 1007 bp 51.94 4.57 100.40
sw_4_scaffold_19100
Class: Halobacteria (66.67%)
3 1007 bp 66.93 32.67 100.40
sw_4_scaffold_4470
Order: Halobacteriales (66.67%)
3 2788 bp 66.86 19.08 100.40
sw_4_scaffold_12352
Species: Natrinema gari (50%)
2 2029 bp 60.67 27.45 100.39
sw_4_scaffold_10969
Order: Halobacteriales (66.67%)
3 1551 bp 65.57 7.35 100.39
sw_4_scaffold_35335
Species: Halococcus thailandensis (50%)
2 1034 bp 71.18 11.12 100.39
sw_4_scaffold_13804
Species: Halogranum salarium (50%)
2 1306 bp 70.90 29.48 100.38
sw_4_scaffold_18248
Species: Halorubrum sp. J07HR59 (50%)
2 1046 bp 67.02 8.41 100.38
sw_4_scaffold_16399 3 1575 bp 60.06 13.65 100.38
sw_4_scaffold_18147
Species: Halococcus saccharolyticus (50%)
2 1052 bp 70.15 26.71 100.38
sw_4_scaffold_6522
Class: Halobacteria (66.67%)
3 2902 bp 66.82 9.41 100.38
sw_4_scaffold_12284
Species: Halosimplex carlsbadense (100%)
3 2113 bp 70.23 16.56 100.38
sw_4_scaffold_18004
Genus: Haloarcula (66.67%)
3 1058 bp 62.67 37.05 100.38
Displaying items 251-300 of 16501 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.