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SW_4_Oscillatoriophycideae_48_29

In projects: SW_4

Consensus taxonomy: Oscillatoriophycideae  →  Cyanobacteria  →  Bacteria

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 29.00 Longest contig: 92.49 Kbp Bin length: 3.24 Mbp GC content: 48.23 %
Contigs count: 192 Features count: 3165 rRNAs count: 0 tRNAs count: 36

Genome completeness

near complete RP 48 / 55 MC: 2 BSCG 49 / 51 ASCG 11 / 38
Displaying items 101-150 of 192 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_91
Class: Oscillatoriophycideae (53.85%)
26 22148 bp 48.10 28.95 83.12
sw_4_scaffold_31
Class: Oscillatoriophycideae (58.06%)
31 33503 bp 47.49 28.88 79.27
sw_4_scaffold_116
Phylum: Cyanobacteria (81.25%)
16 19916 bp 49.15 28.87 81.90
sw_4_scaffold_330
Class: Oscillatoriophycideae (53.33%)
15 19292 bp 49.22 28.80 76.99
sw_4_scaffold_104
Class: Oscillatoriophycideae (82.61%)
23 23309 bp 48.69 28.80 79.72
sw_4_scaffold_99
Class: Oscillatoriophycideae (68.18%)
22 21495 bp 48.45 28.79 80.67
sw_4_scaffold_13
Class: Oscillatoriophycideae (69.57%)
46 59147 bp 48.65 28.77 77.21
sw_4_scaffold_490
Order: Oscillatoriales (50%)
10 9277 bp 48.96 28.77 88.12
sw_4_scaffold_1598
Class: Oscillatoriophycideae (60%)
5 4892 bp 46.10 28.74 70.52
sw_4_scaffold_3899
Phylum: Cyanobacteria (66.67%)
6 4257 bp 45.64 28.73 72.16
sw_4_scaffold_283
Order: Oscillatoriales (58.33%)
12 12661 bp 48.21 28.72 77.67
sw_4_scaffold_23
Class: Oscillatoriophycideae (63.83%)
47 36456 bp 49.59 28.71 83.63
sw_4_scaffold_3790
Phylum: Cyanobacteria (70%)
10 7473 bp 45.82 28.70 72.34
sw_4_scaffold_1721
Order: Pleurocapsales (50%)
4 4709 bp 48.99 28.69 67.85
sw_4_scaffold_197
Phylum: Cyanobacteria (76.47%)
17 15611 bp 49.11 28.69 80.29
sw_4_scaffold_139
Class: Oscillatoriophycideae (51.43%)
35 23998 bp 47.56 28.66 78.41
sw_4_scaffold_1791
Class: Oscillatoriophycideae (66.67%)
6 4603 bp 48.82 28.66 75.02
sw_4_scaffold_19
Class: Oscillatoriophycideae (57.78%)
45 47961 bp 48.51 28.60 78.07
sw_4_scaffold_49
Class: Oscillatoriophycideae (65%)
40 29224 bp 48.36 28.60 82.71
sw_4_scaffold_108
Class: Oscillatoriophycideae (50%)
22 20799 bp 48.67 28.60 81.88
sw_4_scaffold_288
Phylum: Cyanobacteria (100%)
11 12532 bp 49.31 28.57 83.35
sw_4_scaffold_63
Class: Oscillatoriophycideae (50%)
22 25637 bp 49.75 28.57 85.45
sw_4_scaffold_1334
Phylum: Cyanobacteria (57.14%)
7 5398 bp 45.31 28.55 57.35
sw_4_scaffold_554
Class: Oscillatoriophycideae (55.56%)
9 8634 bp 48.52 28.54 86.34
sw_4_scaffold_38
Class: Oscillatoriophycideae (64%)
25 32347 bp 48.33 28.53 85.15
sw_4_scaffold_1108
Order: Oscillatoriales (50%)
6 6494 bp 47.81 28.53 80.57
sw_4_scaffold_111
Class: Oscillatoriophycideae (55.56%)
36 35517 bp 48.47 28.48 75.12
sw_4_scaffold_69
Class: Oscillatoriophycideae (61.29%)
31 28708 bp 47.70 28.45 81.57
sw_4_scaffold_210
Class: Oscillatoriophycideae (62.5%)
16 15270 bp 48.64 28.43 81.02
sw_4_scaffold_717
Phylum: Cyanobacteria (80%)
10 9994 bp 48.64 28.42 72.52
sw_4_scaffold_468
Class: Oscillatoriophycideae (68.42%)
19 23831 bp 48.71 28.36 84.41
sw_4_scaffold_217
Class: Oscillatoriophycideae (53.33%)
15 14842 bp 47.43 28.34 82.61
sw_4_scaffold_346
Order: Oscillatoriales (50%)
14 11256 bp 49.65 28.31 89.47
sw_4_scaffold_72
Class: Oscillatoriophycideae (62.07%)
29 27665 bp 46.81 28.29 82.27
sw_4_scaffold_831
Order: Oscillatoriales (77.78%)
9 11549 bp 48.64 28.27 79.77
sw_4_scaffold_14
Order: Oscillatoriales (51.28%)
39 45085 bp 48.54 28.26 86.91
sw_4_scaffold_209
Order: Oscillatoriales (57.89%)
19 23135 bp 47.46 28.24 77.87
sw_4_scaffold_12
Class: Oscillatoriophycideae (54.55%)
44 48281 bp 48.74 28.23 82.95
sw_4_scaffold_2433
Class: Oscillatoriophycideae (80%)
5 3908 bp 48.57 28.22 80.76
sw_4_scaffold_163
Class: Oscillatoriophycideae (87.5%)
16 17100 bp 49.12 28.21 84.88
sw_4_scaffold_741
Species: Pleurocapsa minor (50%)
6 7310 bp 48.48 28.19 78.06
sw_4_scaffold_2091
Phylum: Cyanobacteria (80%)
5 5268 bp 49.72 28.13 76.31
sw_4_scaffold_76
Class: Oscillatoriophycideae (62.5%)
48 45726 bp 48.01 28.13 78.66
sw_4_scaffold_54
Phylum: Cyanobacteria (81.48%)
54 57425 bp 49.06 28.08 82.37
sw_4_scaffold_1277
Class: Oscillatoriophycideae (66.67%)
6 5509 bp 48.87 28.01 57.45
sw_4_scaffold_4
Class: Oscillatoriophycideae (65%)
80 92493 bp 49.11 28.01 80.33
sw_4_scaffold_868
Class: Oscillatoriophycideae (80%)
5 6710 bp 49.61 27.99 72.38
sw_4_scaffold_2332
Order: Oscillatoriales (55.56%)
9 6446 bp 48.63 27.98 82.94
sw_4_scaffold_1907
Order: Oscillatoriales (66.67%)
3 4432 bp 48.62 27.96 63.83
sw_4_scaffold_233
Class: Oscillatoriophycideae (62.5%)
16 14935 bp 48.78 27.92 77.07
Displaying items 101-150 of 192 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.