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sw_4_scaffold_118

Search features with annotation key words

Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_118_1
Meiothermus silvanus, Meiothermus, Thermales, Deinococci, Deinococcus-Thermus, Bacteria

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2..919
DNA (918bp) protein (306aa)
ATP-dependent chaperone ClpB n=1 Tax=Meiothermus silvanus (strain ATCC 700542 / DSM 9946 / VI-R2) RepID=D7BI82_MEISD
ATP-dependent chaperone ClpB
Chaperone protein ClpB {ECO:0000256|RuleBase:RU362034}; TaxID=526227 species="Bacteria; Deinococcus-Thermus; Deinococci; Thermales; Thermaceae; Meiothermus.;" source="Meiothermus silvanus (strain ATCC
sw_4_scaffold_118_2
unknown

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939..1124
DNA (186bp) protein (62aa)

This feature has no annotations

sw_4_scaffold_118_3
GWF1_OD1_35_5, Moranbacteria, Parcubacteria, Bacteria

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1108..2316
DNA (1209bp) protein (403aa)
Uncharacterized protein {ECO:0000313|EMBL:KKP82774.1}; TaxID=1618716 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWF1_35_5.;"
probable transcription regulator id=130353 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
cell envelope-related transcriptional attenuator
sw_4_scaffold_118_4
CG_CPR07_01, CG_CPR07, Bacteria

Not on your lists

2313..2825
DNA (513bp) protein (171aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29); K01056 peptidyl-tRNA hydrolase, PTH1 family [EC:3.1.1.29] Tax=CG_CPR07_01
peptidyl-tRNA hydrolase n=1 Tax=Kurthia sp. JC8E RepID=UPI000287A538
peptidyl-tRNA hydrolase
sw_4_scaffold_118_5
R_RIF_OD1_05_43_12, RIF-OD1-5, Parcubacteria, Bacteria

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2917..3864
DNA (948bp) protein (316aa)
dTDP-glucose 4,6-dehydratase; K01710 dTDP-glucose 4,6-dehydratase [EC:4.2.1.46] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_05_43_12_curated
dTDP-glucose 4,6-dehydratase n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JU25_NATP1
dTDP-glucose 4,6-dehydratase
sw_4_scaffold_118_6
GWA2_PER_47_7, Peregrinibacteria, Bacteria

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3875..4750
DNA (876bp) protein (292aa)
gtaB; UTP-glucose-1-phosphate uridylyltransferase (EC:2.7.7.9)
UTP-glucose-1-phosphate uridylyltransferase {ECO:0000313|EMBL:KKU78677.1}; TaxID=1619058 species="Bacteria; Peregrinibacteria.;" source="Peregrinibacteria bacterium GW2011_GWA2_47_7.;"
UTP-glucose-1-phosphate uridylyltransferase id=2648847 bin=GWC1_OD1_38_17 species=unknown genus=unknown taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
sw_4_scaffold_118_7
R_OD1_Magasanikbacteria_47_14, Magasanikbacteria, Parcubacteria, Bacteria

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4769..6337
DNA (1569bp) protein (523aa)
mviN1; integral membrane protein MviN; K03980 virulence factor Tax=RIFCSPHIGHO2_02_FULL_OD1_Magasanikbacteria_47_14_curated
Integral membrane protein MviN id=2073055 bin=GWE2_OD1_38_254 species=GWE2_OD1_38_254 genus=GWE2_OD1_38_254 taxon_order=GWE2_OD1_38_254 taxon_class=GWE2_OD1_38_254 phylum=OD1 tax=GWE2_OD1_38_254 organism_group=OD1 (Parcubacteria)
integral membrane protein MviN
sw_4_scaffold_118_8
RIFOXYA2_FULL_Melainabacteria_32_9_curated, Melainabacteria, Bacteria

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6369..6629
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2EB19_9BACT
hypothetical protein Tax=RIFOXYA2_FULL_Melainabacteria_32_9_curated
glutathione S-transferase
sw_4_scaffold_118_9
GWA1_OD1_40_21, Parcubacteria, Bacteria

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6654..7784
DNA (1131bp) protein (377aa)
alanine racemase (EC:5.1.1.1)
Alanine racemase n=1 Tax=Moorella thermoacetica (strain ATCC 39073) RepID=Q2RGI3_MOOTA
Alanine racemase 2 {ECO:0000313|EMBL:KKR53757.1}; TaxID=1618784 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_40_21.;"
sw_4_scaffold_118_10

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7858..9099
DNA (1242bp) protein (414aa)
Uncharacterized protein (Fragment) n=1 Tax=Candidatus Pelagibacter ubique HTCC1002 RepID=Q1V2X6_PELUQ
Uncharacterized protein {ECO:0000313|EMBL:AKH48451.1}; TaxID=186617 species="Viruses; environmental samples.;" source="uncultured marine virus.;"
secretory autotransporter
sw_4_scaffold_118_11

Not on your lists

9533..10786
DNA (1254bp) protein (418aa)
Uncharacterized protein n=1 Tax=Ruegeria sp. (strain TM1040) RepID=Q1GG28_RUEST
Marine sediment metagenome DNA, contig: S12H4_C00002 {ECO:0000313|EMBL:GAI67333.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagen
hypothetical protein
sw_4_scaffold_118_12
Dysgonomonas mossii, Dysgonomonas, Bacteroidales, Bacteroidia, Bacteroidetes, Bacteria

Not on your lists

comp(11149..12066)
DNA (918bp) protein (306aa)
6-phosphogluconate dehydrogenase, decarboxylating n=1 Tax=Dysgonomonas mossii DSM 22836 RepID=F8X0F9_9PORP
6-phosphogluconate dehydrogenase {ECO:0000313|EMBL:EGK03854.1}; TaxID=742767 species="Bacteria; Bacteroidetes; Bacteroidia; Bacteroidales; Porphyromonadaceae; Dysgonomonas.;" source="Dysgonomonas moss
hypothetical protein
sw_4_scaffold_118_13
CG_PER_01, Peregrinibacteria, Bacteria

Not on your lists

comp(12386..13009)
DNA (624bp) protein (208aa)
transmembrane_regions 9..26 Tax=CG_PER_01
transmembrane_regions 9..26 id=84179 bin=ACD56 species=ACD56 genus=ACD56 taxon_order=ACD56 taxon_class=ACD56 phylum=OD1-i tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
hypothetical protein
sw_4_scaffold_118_14
GWA2_OD1_51_10, Parcubacteria, Bacteria

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13107..13448
DNA (342bp) protein (114aa)
Putative pterin-4-alpha-carbinolamine dehydratase n=1 Tax=Ilyobacter polytropus (strain DSM 2926 / CuHBu1) RepID=E3H6C1_ILYPC
Putative pterin-4-alpha-carbinolamine dehydratase Tax=GWA2_OD1_51_10
transcriptional coactivator/pterin dehydratase
sw_4_scaffold_118_trna_1
unknown

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13467..13550
DNA (84bp)
transferRNA
sw_4_scaffold_118_15
Ruminiclostridium thermocellum, Ruminiclostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

13637..14665
DNA (1029bp) protein (343aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4)
Serine-type D-Ala-D-Ala carboxypeptidase {ECO:0000313|EMBL:ABN54374.1}; EC=3.4.16.4 {ECO:0000313|EMBL:ABN54374.1};; TaxID=203119 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Ruminococcace
Serine-type D-Ala-D-Ala carboxypeptidase n=4 Tax=Clostridium thermocellum RepID=E6ULP1_CLOTL
sw_4_scaffold_118_16
GWA2_OD1_39_10_partial, Azambacteria, Parcubacteria, Bacteria

Not on your lists

14662..15456
DNA (795bp) protein (265aa)
ATPase, ParA family (Fragment) Tax=GWA2_OD1_39_10_partial
Chromosome segregation ATPase id=4731863 bin=GWC2_OD1_43_27 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=GWC2_OD1_43_27 organism_group=OD1 (Parcubacteria) organism_desc=Same as C1_43_61 and D1_43_18 Curated this version (complete)
soj; chromosome segregation ATPase
sw_4_scaffold_118_17

Not on your lists

15485..16390
DNA (906bp) protein (302aa)
chromosome segregation DNA-binding protein; K03497 chromosome partitioning protein, ParB family id=2657 bin=ACD11 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=ACD11 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE16105.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
parB-like partition protein
sw_4_scaffold_118_18
RLO_OD1_Magasanikbacteria_43_12, Magasanikbacteria, Parcubacteria, Bacteria

Not on your lists

16387..16779
DNA (393bp) protein (131aa)
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-] Tax=RIFCSPLOWO2_12_FULL_OD1_Magasanikbacteria_43_12_curated
Putative Holliday junction resolvase n=1 Tax=Desulfovibrio salexigens (strain ATCC 14822 / DSM 2638 / NCIB 8403 / VKM B-1763) RepID=RUVX_DESAD
Holliday junction resolvase YqgF
sw_4_scaffold_118_19
RLO_OD1_41_13, Parcubacteria, Bacteria

Not on your lists

16795..17787
DNA (993bp) protein (331aa)
galactose-1-phosphate uridylyltransferase (EC:2.7.7.12); K00965 UDPglucose--hexose-1-phosphate uridylyltransferase [EC:2.7.7.12] Tax=RIFCSPLOWO2_12_FULL_OD1_41_13_curated
Galactose-1-phosphate uridylyltransferase id=4336507 bin=GWC2_ACD39_50_8 species=unknown genus=Thermotoga taxon_order=Thermotogales taxon_class=Thermotogae phylum=Thermotogae tax=GWC2_ACD39_50_8 organism_group=ACD39
galactose-1-phosphate uridylyltransferase
sw_4_scaffold_118_20
R_RIF_OD1_03_48_11, RIF-OD1-3, Parcubacteria, Bacteria

Not on your lists

17802..18461
DNA (660bp) protein (220aa)
radC; DNA repair protein RadC; K03630 DNA repair protein RadC Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_03_48_11_curated
Uncharacterized protein id=1250202 bin=RBG1 species=RBG1 genus=RBG1 taxon_order=RBG1 taxon_class=RBG1 phylum=Zixibacteria tax=RBG1 organism_group=Zixibacteria
hypothetical protein
sw_4_scaffold_118_21
R_RIF_OD1_11_45_15b, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

18503..19126
DNA (624bp) protein (208aa)
signal peptidase I (EC:3.4.21.89); K03100 signal peptidase I [EC:3.4.21.89] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_11_45_15b_curated
Signal peptidase I id=2438165 bin=GWA1_Kazan_50_15 species=GWC1_KAZAN_52_13 genus=GWC1_KAZAN_52_13 taxon_order=GWC1_KAZAN_52_13 taxon_class=GWC1_KAZAN_52_13 phylum=KAZAN tax=GWA1_Kazan_50_15 organism_group=Kazan organism_desc=Probably Kazan: candidate for curation
lepB2; signal peptidase I
sw_4_scaffold_118_22
R_RIF_OD1_07_41_9, RIF-OD1-7, Parcubacteria, Bacteria

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19132..20427
DNA (1296bp) protein (432aa)
hisS1; histidyl-tRNA synthetase; K01892 histidyl-tRNA synthetase [EC:6.1.1.21] Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_07_41_9_curated
dly:Dehly_1372 histidyl-tRNA synthetase (EC:6.1.1.21); K01892 histidyl-tRNA synthetase [EC:6.1.1.21] id=129558 bin=ACD7 species=ACD7 genus=ACD7 taxon_order=ACD7 taxon_class=ACD7 phylum=OD1-i tax=ACD7 organism_group=OD1-i organism_desc=OD1-i
histidyl-tRNA synthetase (EC:6.1.1.21)
Displaying 23 items

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