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sw_4_scaffold_438

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_438_1
R_OD1_Nomurabacteria_42_19, Nomurabacteria, Parcubacteria, Bacteria

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2..532
DNA (531bp) protein (177aa)
gap; Glyceraldehyde-3-phosphate dehydrogenase (EC:1.2.1.12) Tax=RIFCSPHIGHO2_02_FULL_OD1_Nomurabacteria_42_19_curated
glyceraldehyde-3-phosphate dehydrogenase (phosphorylating) (EC:1.2.1.12)
glyceraldehyde-3-phosphate dehydrogenase, type I id=14423927 bin=bin11_novelCP species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Parcubacteria tax=bin11_novelCP organism_group=Unknown_CP
sw_4_scaffold_438_2

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comp(543..1601)
DNA (1059bp) protein (353aa)
Tyrosine recombinase XerC {ECO:0000313|EMBL:KKS29932.1}; TaxID=1618925 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWC2_42_11.;"
hypothetical protein id=5801201 bin=GWE2_OD1_42_8 species=GW2011_OD1_1 genus=GW2011_OD1_1 taxon_order=GW2011_OD1_1 taxon_class=GW2011_OD1_1 phylum=OD1 tax=GWE2_OD1_42_8 organism_group=OD1 (Parcubacteria) organism_desc=GW2011_OD1_1 GW2011_A
tyrosine recombinase XerD
sw_4_scaffold_438_3
unknown

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1909..2016
DNA (108bp) protein (36aa)

This feature has no annotations

sw_4_scaffold_438_4

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comp(2045..3394)
DNA (1350bp) protein (450aa)
transmembrane_regions 313..335 id=7981 bin=ACD15 species=ACD15 genus=ACD15 taxon_order=ACD15 taxon_class=ACD15 phylum=OD1-i tax=ACD15 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:EKE11280.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sw_4_scaffold_438_5
R_RIF_OD1_07_48_27b, RIF-OD1-7, Parcubacteria, Bacteria

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comp(3402..4577)
DNA (1176bp) protein (392aa)
class V aminotransferase; K04487 cysteine desulfurase [EC:2.8.1.7] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_07_48_27b_curated
Aminotransferase class V id=2720175 bin=GWA1_ZB2_49_26 species=ACD11 genus=ACD11 taxon_order=ACD11 taxon_class=ACD11 phylum=OD1-i tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
cysteine desulfurase NifS
sw_4_scaffold_438_6
RLO_OD1_Jorgensenbacteria_42_11, Jorgensenbacteria, Parcubacteria, Bacteria

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comp(4581..5318)
DNA (738bp) protein (246aa)
Uncharacterized protein n=1 Tax=Pythium ultimum RepID=K3X6G8_PYTUL
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_OD1_Jorgensenbacteria_42_11_curated
hypothetical protein
sw_4_scaffold_438_7
GWD2_OD1_46_48, Azambacteria, Parcubacteria, Bacteria

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5528..8224
DNA (2697bp) protein (899aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000362505B
Protein translocase subunit SecA {ECO:0000313|EMBL:KKU42728.1}; TaxID=1618623 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Azambacteria) bacterium GW2011_GWD2_46_48.;"
Preprotein translocase subunit SecA
sw_4_scaffold_438_trna_2
unknown

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comp(8781..8853)
DNA (73bp)
transferRNA
sw_4_scaffold_438_8
R_OD1_Yanofskybacteria_41_21, Yanofskybacteria, Parcubacteria, Bacteria

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comp(8903..9904)
DNA (1002bp) protein (334aa)
id=2192970 Tax=RIFCSPHIGHO2_01_FULL_OD1_Yanofskybacteria_41_21_curated
sw_4_scaffold_438_trna_1
unknown

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comp(10138..10210)
DNA (73bp)
transferRNA
sw_4_scaffold_438_9
RHI_SM2F11_48_16, SM2F11, Bacteria

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comp(12749..14158)
DNA (1410bp) protein (470aa)
lysS; lysyl-tRNA synthetase; K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] id=15190518 bin=GWB1_SUB10_ACD81 species=GWE2_OD1_ACD81_47_12 genus=GWE2_OD1_ACD81_47_12 taxon_order=GWE2_OD1_ACD81_47_12 taxon_class=GWE2_OD1_ACD81_47_12 phylum=OD1 tax=GWB1_SUB10_ACD81 organism_group=OD1 (Parcubacteria) organism_desc=Complete
lysyl-tRNA synthetase Tax=RIFCSPHIGHO2_12_FULL_SM2F11_48_16_curated
hypothetical protein
sw_4_scaffold_438_10
Caloramator australicus, Caloramator, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(14160..14888)
DNA (729bp) protein (243aa)
Methionine aminopeptidase {ECO:0000256|HAMAP-Rule:MF_01974}; Short=MAP {ECO:0000256|HAMAP-Rule:MF_01974};; Short=MetAP {ECO:0000256|HAMAP-Rule:MF_01974};; EC=3.4.11.18 {ECO:0000256|HAMAP-Rule:MF_01974
map; methionine aminopeptidase (EC:3.4.11.18)
Methionine aminopeptidase n=1 Tax=Caloramator australicus RC3 RepID=I7K6X7_9CLOT
sw_4_scaffold_438_11
RIFCSPLOWO2_12_FULL_RIF_OD1_10_39_16_curated, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(14891..15466)
DNA (576bp) protein (192aa)
adk; adenylate kinase (EC:2.7.4.3); K00939 adenylate kinase [EC:2.7.4.3] Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_10_39_16_curated
Adenylate kinase id=3423183 bin=GWA1_ZB2_49_26 species=uncultured Bacteroidetes bacterium genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=GWA1_ZB2_49_26 organism_group=ZB2 organism_desc=Good
adenylate kinase-like kinase
sw_4_scaffold_438_12
Youngiibacter fragilis, Youngiibacter, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

15469..16023
DNA (555bp) protein (185aa)
Fur family transcriptional regulator n=1 Tax=Youngiibacter fragilis 232.1 RepID=V7I1S5_9CLOT
Fur family transcriptional regulator {ECO:0000313|EMBL:ETA79119.1}; TaxID=994573 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Youngiibacter.;" source="Youngiibacter fragil
Fur family ferric uptake regulator
sw_4_scaffold_438_13
Methanolobus tindarius, Methanolobus, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

16390..17487
DNA (1098bp) protein (366aa)
UPI0003D1ACB1 related cluster n=1 Tax=unknown RepID=UPI0003D1ACB1
ABC-type metal ion transport system, periplasmic component/surface adhesin {ECO:0000313|EMBL:ETA67540.1}; Flags: Precursor;; TaxID=1090322 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarc
periplasmic solute binding protein
sw_4_scaffold_438_14
Desulfarculus baarsii, Desulfarculus, Desulfarculales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17489..18169
DNA (681bp) protein (227aa)
ABC transporter related protein n=1 Tax=Desulfarculus baarsii (strain ATCC 33931 / DSM 2075 / VKM B-1802 / 2st14) RepID=E1QEI9_DESB2
ABC transporter
ABC transporter related protein {ECO:0000313|EMBL:ADK83975.1}; TaxID=644282 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfarculales; Desulfarculaceae; Desulfarculus.;" source="Desulfar
sw_4_scaffold_438_15
Methanosarcina horonobensis, Methanosarcina, Methanosarcinales, Methanomicrobia, Euryarchaeota, Archaea

Not on your lists

18178..18819
DNA (642bp) protein (214aa)
Zinc ABC transporter, inner membrane permease protein ZnuB n=1 Tax=Methanosarcina mazei Tuc01 RepID=M1PWY2_METMZ
Zinc ABC transporter, inner membrane permease protein ZnuB {ECO:0000313|EMBL:AKB80556.1}; TaxID=1434110 species="Archaea; Euryarchaeota; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methano
Zinc ABC transporter permease
Displaying 17 items

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