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sw_4_scaffold_198

Search features with annotation key words

Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_198_1
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3..914
-----------------
DNA (912bp)
protein (304aa)
Probable tRNA sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; EC=2.8.1.4 {ECO:0000256|HAMAP-Rule:MF_00021};; Sulfur carrier protein ThiS sulfurtransferase {ECO:0000256|HAMAP-Rule:MF_00021}; Thiam
Probable tRNA sulfurtransferase n=1 Tax=Halobacterium sp. DL1 RepID=G4IDE1_9EURY
thiI; thiamine biosynthesis protein ThiI (ATP pyrophosphatase)
sw_4_scaffold_198_2
Candidatus Nanosalinarum sp. J07AB56, Candidatus Nanosalinarum, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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967..1284
-----------------
DNA (318bp)
protein (106aa)
# 243130 # 243459 # 1 # ;gc_cont=0.612 id=18316109 bin=Nanosalinarum tax=Nanosalinarum
Uncharacterized protein {ECO:0000313|EMBL:EGQ39885.1}; TaxID=889962 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalinarum.;" source="Nanosalinarum sp. (strain J07AB56).;"
sw_4_scaffold_198_3
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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1339..2706
-----------------
DNA (1368bp)
protein (456aa)
# 24983 # 26314 # -1 # ;gc_cont=0.433 id=18314476 bin=Nanosalina tax=Nanosalina
Uncharacterized protein {ECO:0000313|EMBL:EGQ43738.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
sw_4_scaffold_198_trna_1
unknown

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2800..2873
-----------------
DNA (74bp)
transferRNA
sw_4_scaffold_198_4
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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2970..3542
-----------------
DNA (573bp)
protein (191aa)
phage SPO1 DNA polymerase-like protein; K02334 DNA polymerase bacteriophage-type [EC:2.7.7.7] id=18314474 bin=Nanosalina tax=Nanosalina
Uracil-DNA glycosylase, family 4 {ECO:0000313|EMBL:EGQ43737.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
phage SPO1 DNA polymerase-like protein
sw_4_scaffold_198_5
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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3566..4441
-----------------
DNA (876bp)
protein (292aa)
RNA methylase (EC:2.1.1.29) id=18314473 bin=Nanosalina tax=Nanosalina
RNA methylase (EC:2.1.1.29)
NOL1/NOP2/sun family protein {ECO:0000313|EMBL:EGQ43736.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
sw_4_scaffold_198_6
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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4419..4859
-----------------
DNA (441bp)
protein (147aa)
hypothetical protein id=18314472 bin=Nanosalina tax=Nanosalina
Uncharacterized protein {ECO:0000313|EMBL:EGQ43735.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
sw_4_scaffold_198_7
unknown

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comp(4856..5107)
-----------------
DNA (252bp)
protein (84aa)

This feature has no annotations

sw_4_scaffold_198_8
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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5354..5947
-----------------
DNA (594bp)
protein (198aa)
Riboflavin synthase subunit alpha {ECO:0000313|EMBL:ELY64229.1}; EC=2.5.1.9 {ECO:0000313|EMBL:ELY64229.1};; Riboflavin synthase, alpha subunit {ECO:0000313|EMBL:AFZ72386.1}; TaxID=797304 species="Arch
Riboflavin synthase subunit alpha n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AEW5_NATGS
riboflavin synthase subunit alpha
sw_4_scaffold_198_9
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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5973..6836
-----------------
DNA (864bp)
protein (288aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" sou
Heat shock protein HtpX id=18314470 bin=Nanosalina tax=Nanosalina
protease htpX
sw_4_scaffold_198_10
unknown

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6840..7592
-----------------
DNA (753bp)
protein (251aa)

This feature has no annotations

sw_4_scaffold_198_11
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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comp(7589..8551)
-----------------
DNA (963bp)
protein (321aa)
graD; sugar nucleotidyltransferase ( glucose-1-phosphate thymidylyltransferase) (EC:2.7.7.24) id=18314468 bin=Nanosalina tax=Nanosalina
graD; sugar nucleotidyltransferase ( glucose-1-phosphate thymidylyltransferase) (EC:2.7.7.24)
Nucleoside-diphosphate-sugar pyrophosphorylase {ECO:0000313|EMBL:EGQ43730.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain
sw_4_scaffold_198_12
Halonotius sp. J07HN6, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(8588..9562)
-----------------
DNA (975bp)
protein (325aa)
hypothetical protein id=24620561 bin=Halonotius_J07HN6 species=Halonotius sp. J07HN6 genus=Halonotius taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halonotius_J07HN6
TIGR00269 family protein {ECO:0000313|EMBL:ERH02474.1}; TaxID=1238427 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J07HN6.;"
TIGR00269 family protein
sw_4_scaffold_198_13

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comp(9589..10254)
-----------------
DNA (666bp)
protein (222aa)
Haloacid dehalogenase family protein n=1 Tax=uncultured archaeon A07HR60 RepID=V5A6H0_9ARCH
Haloacid dehalogenase family protein {ECO:0000313|EMBL:ESS11130.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
HAD-superfamily hydrolase
sw_4_scaffold_198_trna_2
unknown

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10335..10423
-----------------
DNA (89bp)
transferRNA
sw_4_scaffold_198_14
Candidatus Nanosalina sp. J07AB43, Candidatus Nanosalina, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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10616..10852
-----------------
DNA (237bp)
protein (79aa)
histone id=18314343 bin=Nanosalina tax=Nanosalina
Histone-like transcription factor {ECO:0000313|EMBL:EGQ43804.1}; TaxID=889948 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Nanosalina.;" source="Nanosalina sp. (strain J07AB43).;"
sw_4_scaffold_198_15
unknown

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comp(10861..11649)
-----------------
DNA (789bp)
protein (263aa)

This feature has no annotations

sw_4_scaffold_198_16
Candidatus Haloredivivus sp. G17, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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comp(11776..11970)
-----------------
DNA (195bp)
protein (65aa)
cold-shock protein; K03704 cold shock protein (beta-ribbon, CspA family) id=18311652 bin=Haloredivivus tax=Haloredivivus
Uncharacterized protein {ECO:0000313|EMBL:EHK02122.1}; TaxID=1072681 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Haloredivivus.;" source="Haloredivivus sp. (strain G17).;"
cold-shock DNA-binding domain-containing protein
sw_4_scaffold_198_17
Candidatus Haloredivivus sp. G17, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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12102..14792
-----------------
DNA (2691bp)
protein (897aa)
ATPase, P-type (transporting), HAD superfamily, subfamily IC; K01537 Ca2+-transporting ATPase [EC:3.6.3.8] id=18311077 bin=Haloredivivus tax=Haloredivivus
ATPase, P-type (Transporting), HAD superfamily, subfamily IC {ECO:0000313|EMBL:EHK02693.1}; TaxID=1072681 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Haloredivivus.;" source="Halo
ATPase, P-type (transporting), HAD superfamily, subfamily IC
sw_4_scaffold_198_trna_3
unknown

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comp(14852..14924)
-----------------
DNA (73bp)
transferRNA
sw_4_scaffold_198_18
Candidatus Haloredivivus sp. G17, Nanohaloarchaea, Nanohaloarchaeota, Archaea

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15013..15588
-----------------
DNA (576bp)
protein (192aa)
FAD-dependent pyridine nucleotide-disulfide oxidoreductase id=18311407 bin=Haloredivivus tax=Haloredivivus
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EHK02366.1}; Flags: Fragment;; TaxID=1072681 species="Archaea; Nanohaloarchaeota; Nanohaloarchaea; Candidatus Haloredivivus
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
Displaying 21 items

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