ggKbase home page

sw_4_scaffold_255

Search features with annotation key words

Displaying items 1-30 of 42 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_255_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(139..555)
DNA (417bp) protein (139aa)
msrAB; peptide methionine sulfoxide reductase; K07305 peptide-methionine (R)-S-oxide reductase [EC:1.8.4.12] id=24659776 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Peptide methionine sulfoxide reductase MsrB {ECO:0000256|HAMAP-Rule:MF_01400}; EC=1.8.4.12 {ECO:0000256|HAMAP-Rule:MF_01400};; Peptide-methionine (R)-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01400
msrAB; peptide methionine sulfoxide reductase
sw_4_scaffold_255_2
unknown

Not on your lists

comp(575..724)
DNA (150bp) protein (50aa)

This feature has no annotations

sw_4_scaffold_255_3
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

952..2955
DNA (2004bp) protein (668aa)
Acetyl-coenzyme A synthetase {ECO:0000313|EMBL:CBH24950.1}; EC=6.2.1.1 {ECO:0000313|EMBL:CBH24950.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
AMP-dependent synthetase n=1 Tax=Salisaeta longa RepID=UPI0003B34EB1
acs; acetyl-coenzyme A synthetase
sw_4_scaffold_255_4
RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3094..3402
DNA (309bp) protein (103aa)
hypothetical protein n=1 Tax=Scytonema hofmanni RepID=UPI0003479D47
hypothetical protein Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_62_13_curated
hypothetical protein
sw_4_scaffold_255_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

3399..4598
DNA (1200bp) protein (400aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S1J7_SALRD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC43698.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_255_6
RBG_13_Planctomycetes_62_9_curated, Phycisphaerae, Planctomycetes, Bacteria

Not on your lists

comp(4660..6240)
DNA (1581bp) protein (527aa)
Uncharacterized protein n=1 Tax=Desulfatibacillum alkenivorans (strain AK-01) RepID=B8FLN7_DESAA
hypothetical protein Tax=RBG_13_Planctomycetes_62_9_curated
hypothetical protein
sw_4_scaffold_255_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


comp(6259..7689)
DNA (1431bp) protein (477aa)
Glycine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00006545}; EC=6.1.1.14 {ECO:0000256|HAMAP-Rule:MF_00253, ECO:0000256|SAAS:SAAS00015978};; Glycyl-tRNA synthetase {ECO:000025
Glycine--tRNA ligase n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HBS4_SALRM
glyQS; glycyl-tRNA synthetase
sw_4_scaffold_255_8
unknown

Not on your lists

7982..8413
DNA (432bp) protein (144aa)

This feature has no annotations

sw_4_scaffold_255_9
unknown

Not on your lists

8521..9654
DNA (1134bp) protein (378aa)

This feature has no annotations

sw_4_scaffold_255_10
Parachlamydia acanthamoebae, Parachlamydia, Chlamydiales, Chlamydiia, Chlamydiae, Bacteria

Not on your lists

comp(9722..11149)
DNA (1428bp) protein (476aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=765952 species="Bacteria; Chlamydiae; Chlamydiales; Parachlamydiaceae; Parachlamydia.;" sou
RNA-splicing ligase RtcB n=2 Tax=Parachlamydia acanthamoebae RepID=F8KVU9_PARAV
rtcB; protein rtcB
sw_4_scaffold_255_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11365..11667)
DNA (303bp) protein (101aa)
nitrogen fixation protein NifU n=1 Tax=Salisaeta longa RepID=UPI0003B6B2B9
hypothetical protein
Conserved domain protein {ECO:0000313|EMBL:ABC44958.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
sw_4_scaffold_255_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11816..12619)
DNA (804bp) protein (268aa)
sodium:proton antiporter n=1 Tax=Salisaeta longa RepID=UPI0003B369D2
mrp; hypothetical protein
Mrp protein {ECO:0000313|EMBL:ABC44679.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (strain DS
sw_4_scaffold_255_13
RBG_16_Chloroflexi_63_12_curated, Chloroflexi, Bacteria

Not on your lists

comp(12636..14513)
DNA (1878bp) protein (626aa)
HEPN domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SE36_RHOMR
hypothetical protein Tax=RBG_16_Chloroflexi_63_12_curated
HEPN domain-containing protein
sw_4_scaffold_255_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(14537..15631)
DNA (1095bp) protein (365aa)
Ribosomal protein L11 methyltransferase {ECO:0000256|HAMAP-Rule:MF_00735, ECO:0000256|SAAS:SAAS00189466}; Short=L11 Mtase {ECO:0000256|HAMAP-Rule:MF_00735};; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_0073
Ribosomal protein L11 methyltransferase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJQ1_RHOMR
50S ribosomal protein L11 methyltransferase
sw_4_scaffold_255_15
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

15648..17819
DNA (2172bp) protein (724aa)
Protein serine/threonine phosphatase with GAF(S) sensor(S) n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJQ3_RHOMR
protein serine/threonine phosphatase with GAF(s) sensor(s)
Protein serine/threonine phosphatase with GAF(S) sensor(S) {ECO:0000313|EMBL:AEN74221.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodot
sw_4_scaffold_255_16
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18020..18436
DNA (417bp) protein (139aa)
Anti-sigma factor antagonist n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEI1_RHOM4
anti-sigma-factor antagonist
Anti-sigma factor antagonist {ECO:0000256|RuleBase:RU003749}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodotherm
sw_4_scaffold_255_17
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18621..19034
DNA (414bp) protein (138aa)
Putative anti-sigma regulatory factor, serine/threonine protein kinase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJQ5_RHOMR
putative anti-sigma regulatory factor, serine/threonine protein kinase
Putative anti-sigma regulatory factor, serine/threonine protein kinase {ECO:0000313|EMBL:AEN74223.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherma
sw_4_scaffold_255_18
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(19071..19862)
DNA (792bp) protein (264aa)
Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incerta
Demethylmenaquinone methyltransferase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MEI3_RHOM4
ubiquinone/menaquinone biosynthesis methyltransferase
sw_4_scaffold_255_19
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(19897..20367)
DNA (471bp) protein (157aa)
6-phosphofructokinase (EC:2.7.1.11)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:
6-phosphofructokinase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJQ7_RHOMR
sw_4_scaffold_255_20
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(20442..20858)
DNA (417bp) protein (139aa)
ATP-dependent 6-phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339}; Short=ATP-PFK {ECO:0000256|HAMAP-Rule:MF_00339};; Short=Phosphofructokinase {ECO:0000256|HAMAP-Rule:MF_00339};; EC=2.7.1.11 {ECO:
6-phosphofructokinase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJQ7_RHOMR
6-phosphofructokinase
sw_4_scaffold_255_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21058..22071)
DNA (1014bp) protein (338aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B2EAD7
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23926.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_255_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(22286..23083)
DNA (798bp) protein (266aa)
Leucyl/phenylalanyl-tRNA--protein transferase {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088489}; EC=2.3.2.6 {ECO:0000256|HAMAP-Rule:MF_00688, ECO:0000256|SAAS:SAAS00088482};; L/F-transf
leucyl/phenylalanyl-tRNA--protein transferase n=1 Tax=Salisaeta longa RepID=UPI0003B2ECC7
aat; leucyl/phenylalanyl-tRNA--protein transferase
sw_4_scaffold_255_23
CG_Aenigma_01, Aenigmaarchaeota, Archaea

Not on your lists

comp(23270..24337)
DNA (1068bp) protein (356aa)
aspartate/ammonia ligase (EC:6.3.1.1); K01914 aspartate--ammonia ligase [EC:6.3.1.1] Tax=CG_Aenigma_01
asnA; asparagine synthetase AsnA (EC:6.3.1.1)
asparagine synthase n=1 Tax=Salisaeta longa RepID=UPI0003B5AD57
sw_4_scaffold_255_24
unknown

Not on your lists

comp(24478..24705)
DNA (228bp) protein (76aa)

This feature has no annotations

sw_4_scaffold_255_25
Pyrobaculum aerophilum, Pyrobaculum, Thermoproteales, Thermoprotei, Crenarchaeota, Archaea

Not on your lists

24820..25317
DNA (498bp) protein (166aa)
PaREP15, putative coiled-coil protein n=1 Tax=Pyrobaculum aerophilum (strain ATCC 51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827) RepID=Q8ZZ08_PYRAE
paREP15 coiled-coil protein
PaREP15, putative coiled-coil protein {ECO:0000313|EMBL:AAL62833.1}; TaxID=178306 species="Archaea; Crenarchaeota; Thermoprotei; Thermoproteales; Thermoproteaceae; Pyrobaculum.;" source="Pyrobaculum a
sw_4_scaffold_255_26
RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated, Acidobacteria, Bacteria

Not on your lists

25660..26841
DNA (1182bp) protein (394aa)
hypothetical protein n=1 Tax=Gracilimonas tropica RepID=UPI0003736DB6
phospho-2-dehydro-3-deoxyheptonate aldolase Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
phospho-2-dehydro-3-deoxyheptonate aldolase
sw_4_scaffold_255_27
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26991..28394)
DNA (1404bp) protein (468aa)
phosphodiesterase n=1 Tax=Salisaeta longa RepID=UPI0003B534BA
phosphodiesterase/alkaline phosphatase D
Phosphodiesterase/alkaline phosphatase D {ECO:0000313|EMBL:ACY48289.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodo
sw_4_scaffold_255_28
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28681..30036
DNA (1356bp) protein (452aa)
Integral membrane protein MviN n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H642_SALRM
mviN; integral membrane protein MviN
Integral membrane protein MviN {ECO:0000313|EMBL:CBH23497.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibact
sw_4_scaffold_255_29
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

30589..31176
DNA (588bp) protein (196aa)
UPF0301 protein SRU_0495 n=2 Tax=Salinibacter ruber RepID=Y495_SALRD
hypothetical protein
UPF0301 protein SRU_0495 {ECO:0000255|HAMAP-Rule:MF_00758}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter
sw_4_scaffold_255_30
Syntrophomonas wolfei, Syntrophomonas, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(31336..32073)
DNA (738bp) protein (246aa)
Membrane protein, hemolysin III-like protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei (strain DSM 2245B / Goettingen) RepID=Q0AVQ3_SYNWW
hemolysin III-like protein
Membrane protein, hemolysin III-like protein {ECO:0000313|EMBL:ABI69201.1}; TaxID=335541 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Syntrophomonadaceae; Syntrophomonas.;" source="Syntro
Displaying items 1-30 of 42 in total

View Taxonomy