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sw_4_scaffold_294

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Displaying 18 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_294_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(2..538)
DNA (537bp) protein (179aa)
Anti-FecI sigma factor, FecR n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHL0_RHOM4
anti-FecI sigma factor FecR
Anti-FecI sigma factor, FecR {ECO:0000313|EMBL:ACY47968.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
sw_4_scaffold_294_2
Fulvivirga imtechensis, Fulvivirga, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(822..1394)
DNA (573bp) protein (191aa)
RNA polymerase ECF-type sigma factor n=1 Tax=Fulvivirga imtechensis AK7 RepID=L8JYJ5_9BACT
RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:ELR72719.1}; TaxID=1237149 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Flammeovirgaceae; Fulvivirga.;" source="Fulvivirga imteche
RNA polymerase sigma-70 factor
sw_4_scaffold_294_3
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(1627..4521)
DNA (2895bp) protein (965aa)
Beta-galactosidase {ECO:0000256|SAAS:SAAS00046490}; EC=3.2.1.23 {ECO:0000256|SAAS:SAAS00046490};; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
Putative Glycoside hydrolase n=1 Tax=Streptomyces viridochromogenes Tue57 RepID=L8PL68_STRVR
glycoside hydrolase family 2 sugar binding protein
sw_4_scaffold_294_4
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4693..5724)
DNA (1032bp) protein (344aa)
PfkB domain protein n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJK4_RHOMR
PfkB domain-containing protein
PfkB domain protein {ECO:0000313|EMBL:AEN74172.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus marinus
sw_4_scaffold_294_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(6001..6648)
DNA (648bp) protein (216aa)
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SJK5_RHOMR
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase
2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase {ECO:0000313|EMBL:AEN74173.1}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodo
sw_4_scaffold_294_6
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

comp(6742..7845)
DNA (1104bp) protein (368aa)
Mannonate dehydratase {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414}; EC=4.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00106, ECO:0000256|SAAS:SAAS00189414};; D-mannonate hydro-lyase {ECO:00002
hypothetical protein n=1 Tax=Paenibacillus terrigena RepID=UPI00037C2CFC
Mannonate dehydratase
sw_4_scaffold_294_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(7897..8400)
DNA (504bp) protein (168aa)
hypothetical protein
hypothetical protein id=24656912 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Uncharacterized protein {ECO:0000313|EMBL:ABC43739.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_294_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8645..10372
DNA (1728bp) protein (576aa)
Carboxyl-terminal protease {ECO:0000313|EMBL:CBH25079.1}; EC=3.4.21.102 {ECO:0000313|EMBL:CBH25079.1};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodother
peptidase S41 n=1 Tax=Salisaeta longa RepID=UPI0003B3383F
ctpA; carboxyl-terminal protease
sw_4_scaffold_294_9
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10724..12589
DNA (1866bp) protein (622aa)
peptidase n=1 Tax=Salisaeta longa RepID=UPI0003B4257D
peptidase
Peptidase {ECO:0000313|EMBL:ACY48713.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermus
sw_4_scaffold_294_10
RLO_Gemmatimonadetes_68_9, Gemmatimonadetes, Bacteria

Not on your lists

12574..12768
DNA (195bp) protein (65aa)
peptidase Tax=RIFCSPLOWO2_12_FULL_Gemmatimonadetes_68_9_curated
sw_4_scaffold_294_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

12887..13588
DNA (702bp) protein (234aa)
L-ribulose-5-phosphate 4-epimerase {ECO:0000313|EMBL:ACY47372.1}; EC=5.1.3.4 {ECO:0000313|EMBL:ACY47372.1};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhod
L-ribulose-5-phosphate 4-epimerase n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MES2_RHOM4
L-ribulose-5-phosphate 4-epimerase
sw_4_scaffold_294_12
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13811..14878
DNA (1068bp) protein (356aa)
Alcohol dehydrogenase n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XUF9_SORCE
alcohol dehydrogenase
Alcohol dehydrogenase {ECO:0000313|EMBL:AGP35961.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cel
sw_4_scaffold_294_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(15023..15337)
DNA (315bp) protein (105aa)
30S ribosomal protein S21 n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H8C1_SALRM
rpsU; 30S ribosomal protein S21
30S ribosomal protein S21 {ECO:0000256|HAMAP-Rule:MF_00358, ECO:0000256|RuleBase:RU000667}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Sali
sw_4_scaffold_294_14
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


15488..16126
DNA (639bp) protein (213aa)
nucleoside-triphosphatase rdgB (EC:3.6.1.15)
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard p
Non-canonical purine NTP pyrophosphatase n=1 Tax=Rhodothermus marinus SG0.5JP17-172 RepID=G2SKW7_RHOMR
sw_4_scaffold_294_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16338..17759
DNA (1422bp) protein (474aa)
Retinal pigment epithelial membrane protein n=2 Tax=Salinibacter ruber RepID=D5H4W3_SALRM
15,15' beta carotene dioxygenase
15,15' beta carotene dioxygenase {ECO:0000313|EMBL:ABC44374.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Saliniba
sw_4_scaffold_294_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17899..20595
DNA (2697bp) protein (899aa)
peptidase S9 n=1 Tax=Salisaeta longa RepID=UPI0003B3315B
peptidase S9, prolyl oligopeptidase active site region
Peptidase S9, prolyl oligopeptidase active site region {ECO:0000313|EMBL:CBH24434.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibact
sw_4_scaffold_294_17
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20690..21016
DNA (327bp) protein (109aa)
Sterol-binding domain protein n=2 Tax=Rhodothermus marinus RepID=D0MDT3_RHOM4
Sterol-binding domain-containing protein
Sterol-binding domain protein {ECO:0000313|EMBL:ACY49077.1}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermu
sw_4_scaffold_294_18
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(21111..23117)
DNA (2007bp) protein (669aa)
glucosamine--fructose-6-phosphate aminotransferase (EC:2.6.1.16)
Glutamine--fructose-6-phosphate aminotransferase [isomerizing] {ECO:0000256|HAMAP-Rule:MF_00164, ECO:0000256|SAAS:SAAS00039584}; EC=2.6.1.16 {ECO:0000256|HAMAP-Rule:MF_00164};; D-fructose-6-phosphate
glutamine amidotransferase n=1 Tax=Salisaeta longa RepID=UPI0003B4C59C
Displaying 18 items

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