ggKbase home page

sw_4_scaffold_886

Search features with annotation key words

Displaying 14 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_886_1
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

372..1769
DNA (1398bp) protein (466aa)
Fis family transcriptional regulator n=1 Tax=Salisaeta longa RepID=UPI0003B4F3A4
atoC; Member of the two-component regulatory system atoS/atoC
Response regulatory protein {ECO:0000313|EMBL:ABC44001.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter
sw_4_scaffold_886_2
RBG_16_Chloroflexi_54_18_curated, Chloroflexi, Bacteria

Not on your lists

2146..3165
DNA (1020bp) protein (340aa)
deoxyribose-phosphate aldolase; K01619 deoxyribose-phosphate aldolase [EC:4.1.2.4] Tax=RBG_16_Chloroflexi_54_18_curated
Deoxyribose-phosphate aldolase n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6THL1_9CHLR
deoxyribose-phosphate aldolase
sw_4_scaffold_886_3
Desulfatitalea sp. BRH_c12, Desulfatitalea, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3293..3925
DNA (633bp) protein (211aa)
Gll3852 protein n=1 Tax=Gloeobacter violaceus (strain PCC 7421) RepID=Q7NEM7_GLOVI
Uncharacterized protein {ECO:0000313|EMBL:KJS33560.1}; TaxID=1629708 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfatitalea.;" source="Desulfatit
hypothetical protein
sw_4_scaffold_886_4
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4196..4780)
DNA (585bp) protein (195aa)
PspC domain family n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S229_SALRD
PspC domain-containing protein
PspC domain family {ECO:0000313|EMBL:ABC45415.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_4_scaffold_886_5
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(4973..5572)
DNA (600bp) protein (200aa)
5-formyltetrahydrofolate cyclo-ligase {ECO:0000256|RuleBase:RU361279}; EC=6.3.3.2 {ECO:0000256|RuleBase:RU361279};; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedi
5-formyltetrahydrofolate cyclo-ligase n=1 Tax=Salisaeta longa RepID=UPI0003B5382B
5-formyltetrahydrofolate cyclo-ligase
sw_4_scaffold_886_6
RBG_16_Armatimonadetes_67_12_curated, Armatimonadetes, Bacteria

Not on your lists

comp(6101..6643)
DNA (543bp) protein (181aa)
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase n=1 Tax=Brachybacterium paraconglomeratum RepID=UPI00026C6F86
branched-chain amino acid aminotransferase/4-amino-4-deoxychorismate lyase Tax=RBG_16_Armatimonadetes_67_12_curated
sw_4_scaffold_886_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


6678..7247
DNA (570bp) protein (190aa)
Signal recognition particle protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H9P6_SALRM
ffh; signal recognition particle protein
Signal recognition particle protein {ECO:0000256|HAMAP-Rule:MF_00306, ECO:0000313|EMBL:CBH24751.1}; Fifty-four homolog {ECO:0000256|HAMAP-Rule:MF_00306}; TaxID=761659 species="Bacteria; Bacteroidetes;
sw_4_scaffold_886_8
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


7427..8146
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Salisaeta longa RepID=UPI0003B4069E
30S ribosomal protein S16
30S ribosomal protein S16 {ECO:0000256|HAMAP-Rule:MF_00385}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source="Rhodothermu
sw_4_scaffold_886_9
unknown

Not on your lists

8146..8364
DNA (219bp) protein (73aa)

This feature has no annotations

sw_4_scaffold_886_10
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8364..8882
DNA (519bp) protein (173aa)
Ribosome maturation factor RimM n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHG4_RHOM4
16S rRNA processing protein RimM
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae
sw_4_scaffold_886_11
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

8879..9772
DNA (894bp) protein (298aa)
tRNA (guanine-N(1)-)-methyltransferase (EC:2.1.1.31)
tRNA (guanine-N(1)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464}; EC=2.1.1.228 {ECO:0000256|HAMAP-Rule:MF_00605, ECO:0000256|RuleBase:RU003464};; M1G-methyltrans
tRNA (guanine-N1)-methyltransferase n=1 Tax=Salisaeta longa RepID=UPI0003B4C3CB
sw_4_scaffold_886_12
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists


10005..10352
DNA (348bp) protein (116aa)
50S ribosomal protein L19 n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MHG6_RHOM4
50S ribosomal protein L19
50S ribosomal protein L19 {ECO:0000256|HAMAP-Rule:MF_00402, ECO:0000256|RuleBase:RU000559}; TaxID=762570 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhod
sw_4_scaffold_886_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

10475..11323
DNA (849bp) protein (283aa)
Chorismate dehydratase {ECO:0000256|HAMAP-Rule:MF_00995}; EC=4.2.1.151 {ECO:0000256|HAMAP-Rule:MF_00995};; Menaquinone biosynthetic enzyme MqnA {ECO:0000256|HAMAP-Rule:MF_00995}; TaxID=309807 species=
Uncharacterized protein n=2 Tax=Salinibacter ruber RepID=D5H9P1_SALRM
hypothetical protein
sw_4_scaffold_886_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

11381..11836
DNA (456bp) protein (152aa)
single-stranded DNA-binding protein n=1 Tax=Salisaeta longa RepID=UPI0003B6935F
smpB; SsrA-binding protein
SsrA-binding protein {ECO:0000255|HAMAP-Rule:MF_00023}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rub
Displaying 14 items

View Taxonomy