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sw_4_scaffold_52

Search features with annotation key words

Displaying 23 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_52_1
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

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2..1105
DNA (1104bp) protein (368aa)
TonB-dependent receptor plug n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJI8_RHOM4
TonB-dependent receptor plug
TonB-dependent receptor plug {ECO:0000313|EMBL:ACY48646.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" s
sw_4_scaffold_52_2
unknown

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comp(1049..1219)
DNA (171bp) protein (57aa)

This feature has no annotations

sw_4_scaffold_52_3
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

1634..3181
DNA (1548bp) protein (516aa)
RagB/SusD domain protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MJI7_RHOM4
RagB/SusD domain-containing protein
RagB/SusD domain protein {ECO:0000313|EMBL:ACY48645.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" sourc
sw_4_scaffold_52_4
Gemmatimonadetes bacterium KBS708, Gemmatimonadetes, Gemmatimonadetes, Bacteria

Not on your lists

3326..6703
DNA (3378bp) protein (1126aa)
RNA-binding protein n=1 Tax=Salisaeta longa RepID=UPI0003B6C1AC
ASPIC/UnbV domain protein
ASPIC/UnbV domain protein {ECO:0000313|EMBL:AHG93778.1}; TaxID=861299 species="Bacteria; Gemmatimonadetes.;" source="Gemmatimonadetes bacterium KBS708.;"
sw_4_scaffold_52_5
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(7085..8920)
DNA (1836bp) protein (612aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HAK7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABC44927.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_52_6
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(9111..9878)
DNA (768bp) protein (256aa)
nqrF; Na(+)-translocating NADH-quinone reductase subunit F; K00528 ferredoxin--NADP+ reductase [EC:1.18.1.2] id=24659762 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
nqrF; Na(+)-translocating NADH-quinone reductase subunit F
Na(+)-translocating NADH-quinone reductase subunit F {ECO:0000313|EMBL:CBH24934.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter
sw_4_scaffold_52_7
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(10058..11053)
DNA (996bp) protein (332aa)
MoxR-like transcriptional regulator protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA78_SALRM
moxR; moxR-like transcriptional regulator protein
MoxR-like transcriptional regulator protein {ECO:0000313|EMBL:CBH24933.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" sourc
sw_4_scaffold_52_8
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(11268..12665)
DNA (1398bp) protein (466aa)
ppiD; peptidyl-prolyl cis-trans isomerase surA; K03771 peptidyl-prolyl cis-trans isomerase SurA [EC:5.2.1.8] id=24659760 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
ppiD; peptidyl-prolyl cis-trans isomerase surA
sw_4_scaffold_52_9
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(12720..13598)
DNA (879bp) protein (293aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00143148}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00143148};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA76_SALRM
hypothetical protein
sw_4_scaffold_52_10
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(13897..15900)
DNA (2004bp) protein (668aa)
Peptidylprolyl isomerase {ECO:0000256|SAAS:SAAS00015172}; EC=5.2.1.8 {ECO:0000256|SAAS:SAAS00015172};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodotherm
PPIC-type PPIASE domain protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5HA75_SALRM
PPIC-type PPIASE domain-containing protein
sw_4_scaffold_52_11
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

16258..17754
DNA (1497bp) protein (499aa)
gltX; glutamyl-tRNA synthetase; K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] id=24659757 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Glutamate--tRNA ligase {ECO:0000255|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000255|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000255|HAMAP-Rule:MF_00022}; Short=GluRS {ECO:0000255|HAMAP-Rul
gltX; glutamyl-tRNA synthetase
sw_4_scaffold_52_12
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

17867..18664
DNA (798bp) protein (266aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7F8_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23963.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_52_13
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

18778..19644
DNA (867bp) protein (289aa)
hypothetical protein id=24657735 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23964.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_52_14
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

19673..20431
DNA (759bp) protein (253aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G0_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23965.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_52_15
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

20688..22520
DNA (1833bp) protein (611aa)
hypothetical protein
hypothetical protein id=24657737 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Putative membrane protein {ECO:0000313|EMBL:ABC45600.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ru
sw_4_scaffold_52_16
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(22542..22958)
DNA (417bp) protein (139aa)
Chaperonin, 10 kDa n=1 Tax=Salinibacter ruber (strain DSM 13855 / M31) RepID=Q2S485_SALRD
groS; chaperonin, 10 kDa
Chaperonin, 10 kDa {ECO:0000313|EMBL:ABC43606.1}; TaxID=309807 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter ruber (st
sw_4_scaffold_52_17
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(23185..24264)
DNA (1080bp) protein (360aa)
signal transduction histidine kinase, membrane; K07636 two-component system, OmpR family, phosphate regulon sensor histidine kinase PhoR [EC:2.7.13.3] id=24657741 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
signal transduction histidine kinase, membrane
sw_4_scaffold_52_18
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(24371..25120)
DNA (750bp) protein (250aa)
Uncharacterized proteins, LmbE homolog n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G6_SALRM
LmbE-like protein
Uncharacterized proteins, LmbE homolog {ECO:0000313|EMBL:CBH23971.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Sa
sw_4_scaffold_52_19
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(25161..25376)
DNA (216bp) protein (72aa)
Uncharacterized protein n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7G7_SALRM
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CBH23972.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="Salinibacter rube
sw_4_scaffold_52_20
Rhodothermus marinus, Rhodothermus, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(25438..26589)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Rhodothermus marinus (strain ATCC 43812 / DSM 4252 / R-10) RepID=D0MGI3_RHOM4
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACY49546.1}; Flags: Precursor;; TaxID=518766 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Rhodothermus.;" source
sw_4_scaffold_52_21
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(26608..28647)
DNA (2040bp) protein (680aa)
Vitamin B12 transporter btuB [Precursor] n=1 Tax=Salinibacter ruber (strain M8) RepID=D5H7H1_SALRM
btuB; vitamin B12 transporter btuB
Vitamin B12 transporter btuB [Precursor] {ECO:0000313|EMBL:CBH23976.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae; Salinibacter.;" source="
sw_4_scaffold_52_22
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

28668..29648
DNA (981bp) protein (327aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodothermaceae;
signal transduction histidine kinase, membrane
sensory transduction histidine kinase id=24657749 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
sw_4_scaffold_52_23
Salinibacter ruber, Salinibacter, Bacteroidetes Order II. Incertae sedis, Bacteroidetes, Bacteria

Not on your lists

comp(29739..30194)
DNA (456bp) protein (152aa)
haloalkane dehalogenase; K01563 haloalkane dehalogenase [EC:3.8.1.5] id=24657750 bin=Salinibacter_ruber species=unknown genus=unknown taxon_order=unknown taxon_class=unknown phylum=Bacteroidetes tax=Salinibacter_ruber
alpha/beta hydrolase
Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) {ECO:0000313|EMBL:CBH23979.1}; TaxID=761659 species="Bacteria; Bacteroidetes; Bacteroidetes Order II. Incertae sedis; Rhodot
Displaying 23 items

View Taxonomy
NameRatio
Salinibacter ruber
78.26%
Rhodothermus marinus
13.04%
unknown
4.35%
Gemmatimonadetes bacterium KBS708
4.35%
Salinibacter ruber: 0.782608695652174Rhodothermus marinus: 0.13043478260869565Gemmatimonadetes bacterium KBS708: 0.043478260869565216unknown: 0.043478260869565216Salinibacter ruberRhodothermus marinus