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sw_4_scaffold_250

Search features with annotation key words

Displaying 26 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_250_1
unknown

Not on your lists

3..107
DNA (105bp) protein (35aa)

This feature has no annotations

sw_4_scaffold_250_2
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

692..2047
DNA (1356bp) protein (452aa)
adenylosuccinate lyase (EC:4.3.2.2)
3-carboxy-cis,cis-muconate cycloisomerase n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AFK8_NATA1
3-carboxy-cis,cis-muconate cycloisomerase {ECO:0000313|EMBL:ELY97186.1}; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba asiatica
sw_4_scaffold_250_3
Natrialba asiatica, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2124..3686)
DNA (1563bp) protein (521aa)
Glycine dehydrogenase subunit 2 {ECO:0000313|EMBL:ELZ02373.1}; EC=1.4.4.2 {ECO:0000313|EMBL:ELZ02373.1};; TaxID=29540 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natria
glycine dehydrogenase subunit 2 (EC:1.4.4.2)
Glycine dehydrogenase subunit 2 n=1 Tax=Natrialba asiatica (strain ATCC 700177 / DSM 12278 / JCM 9576 / FERM P-10747 / NBRC 102637 / 172P1) RepID=M0AWM3_NATA1
sw_4_scaffold_250_4
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3683..5023)
DNA (1341bp) protein (447aa)
Glycine dehydrogenase subunit 1 {ECO:0000313|EMBL:ELZ53887.1}; EC=1.4.4.2 {ECO:0000313|EMBL:ELZ53887.1};; TaxID=1227467 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Ha
glycine dehydrogenase subunit 1 (EC:1.4.4.2)
Glycine dehydrogenase subunit 1 n=1 Tax=Halorubrum distributum JCM 9100 RepID=M0F3X2_9EURY
sw_4_scaffold_250_5
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5262..5987)
DNA (726bp) protein (242aa)
Probable RNA 2'-phosphotransferase {ECO:0000256|HAMAP-Rule:MF_00299}; EC=2.7.1.- {ECO:0000256|HAMAP-Rule:MF_00299};; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialba
Probable RNA 2'-phosphotransferase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D5S1_HALXS
RNA 2'-phosphotransferase
sw_4_scaffold_250_6
unknown

Not on your lists

comp(6018..6215)
DNA (198bp) protein (66aa)

This feature has no annotations

sw_4_scaffold_250_7
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6749..6973
DNA (225bp) protein (75aa)
6-phosphogluconate dehydrogenase NAD-binding protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MAN2_9EURY
6-phosphogluconate dehydrogenase NAD-binding protein {ECO:0000313|EMBL:EMA42403.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source
6-phosphogluconate dehydrogenase NAD-binding protein
sw_4_scaffold_250_8
Natronococcus occultus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7028..8086
DNA (1059bp) protein (353aa)
Uncharacterized protein n=1 Tax=Natronococcus occultus SP4 RepID=L0K107_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB37783.1}; TaxID=694430 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus occultus SP4.;"
sw_4_scaffold_250_9
R_Betaproteobacteria_67_26, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8114..9022)
DNA (909bp) protein (303aa)
Gluconolactonase n=1 Tax=Haloferax sulfurifontis ATCC BAA-897 RepID=M0IHR7_9EURY
gnl; gluconolactonase Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_67_26_curated
gnl; gluconolactonase
sw_4_scaffold_250_10

Not on your lists

9374..10312
DNA (939bp) protein (313aa)
Fumarylacetoacetate (FAA) hydrolase n=1 Tax=halophilic archaeon DL31 RepID=G2MJE3_9ARCH
fumarylacetoacetate (FAA) hydrolase
Fumarylacetoacetate (FAA) hydrolase {ECO:0000313|EMBL:AEN04844.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_4_scaffold_250_11
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10290..11687
DNA (1398bp) protein (466aa)
7-cyano-7-deazaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; EC=6.3.4.20 {ECO:0000256|HAMAP-Rule:MF_01633};; 7-cyano-7-carbaguanine synthase {ECO:0000256|HAMAP-Rule:MF_01633}; Archaeosine biosyn
7-cyano-7-deazaguanine synthase n=2 Tax=Halobiforma lacisalsi RepID=M0LUI1_9EURY
exsB protein
sw_4_scaffold_250_12
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11783..13261)
DNA (1479bp) protein (493aa)
tRNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; H
tRNA-splicing ligase RtcB n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CQD0_9EURY
conserved hypothetical protein (UPF0027)
sw_4_scaffold_250_13
unknown

Not on your lists

comp(13242..13562)
DNA (321bp) protein (107aa)

This feature has no annotations

sw_4_scaffold_250_14
unknown

Not on your lists

comp(13590..13844)
DNA (255bp) protein (85aa)

This feature has no annotations

sw_4_scaffold_250_15
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(13952..14383)
DNA (432bp) protein (144aa)
Uncharacterized protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0M7M9_HALMO
Uncharacterized protein {ECO:0000313|EMBL:EMA40380.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
sw_4_scaffold_250_16
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14449..15000
DNA (552bp) protein (184aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N6L3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA53193.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_4_scaffold_250_17
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15135..16205)
DNA (1071bp) protein (357aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N1L1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA51857.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_4_scaffold_250_18
unknown

Not on your lists

16478..16636
DNA (159bp) protein (53aa)

This feature has no annotations

sw_4_scaffold_250_19
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17020..17322)
DNA (303bp) protein (101aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LSN1_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA36451.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
hypothetical protein
sw_4_scaffold_250_20
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17331..17753)
DNA (423bp) protein (141aa)
Transcription regulator n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0LSB2_9EURY
Transcription regulator {ECO:0000313|EMBL:EMA36452.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100
transcription regulator
sw_4_scaffold_250_21
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17880..18248
DNA (369bp) protein (123aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DBB6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ32795.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
hypothetical protein
sw_4_scaffold_250_22
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18370..18969
DNA (600bp) protein (200aa)
Mut/nudix family protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N5J4_9EURY
Mut/nudix family protein {ECO:0000313|EMBL:EMA53192.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
nudix family protein
sw_4_scaffold_250_23
Halorubrum lipolyticum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19150..19941
DNA (792bp) protein (264aa)
Uncharacterized protein n=1 Tax=Halorubrum lipolyticum DSM 21995 RepID=M0NXB6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA62572.1}; TaxID=1227482 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum lipolyticum DSM 2199
hypothetical protein
sw_4_scaffold_250_24
unknown

Not on your lists

20072..20485
DNA (414bp) protein (138aa)

This feature has no annotations

sw_4_scaffold_250_25
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20537..21790)
DNA (1254bp) protein (418aa)
3-dehydroquinate synthase {ECO:0000256|HAMAP-Rule:MF_01244}; Short=DHQ synthase {ECO:0000256|HAMAP-Rule:MF_01244};; EC=1.4.1.24 {ECO:0000256|HAMAP-Rule:MF_01244};; 3-dehydroquinate synthase II {ECO:00
3-dehydroquinate synthase (EC:4.2.3.4)
3-dehydroquinate synthase n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MVQ7_9EURY
sw_4_scaffold_250_26
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(21908..22654)
DNA (747bp) protein (249aa)
Competence-like protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NDA9_9EURY
Competence-like protein {ECO:0000313|EMBL:EMA55967.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
Displaying 26 items

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