ggKbase home page

sw_4_scaffold_5350

Search features with annotation key words

Displaying 11 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_5350_1
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3..1181)
DNA (1179bp) protein (393aa)
Tryptophan--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00140}; EC=6.1.1.2 {ECO:0000256|HAMAP-Rule:MF_00140};; Tryptophanyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00140}; TaxID=1227457 species="Archaea
tryptophanyl-tRNA synthetase (EC:6.1.1.2)
Tryptophan--tRNA ligase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N663_9EURY
sw_4_scaffold_5350_2
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1413..1958
DNA (546bp) protein (182aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MWR6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA50001.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
sw_4_scaffold_5350_3
Haloarcula sp. CBA1115, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1866..2912)
DNA (1047bp) protein (349aa)
tRNA splicing endonuclease (EC:4.6.1.16)
tRNA-splicing endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; EC=4.6.1.16 {ECO:0000256|HAMAP-Rule:MF_01834};; tRNA-intron endonuclease {ECO:0000256|HAMAP-Rule:MF_01834}; TaxID=1592728 species="Archaea
tRNA-splicing endonuclease n=2 Tax=Haloarcula hispanica RepID=G0HRM4_HALHT
sw_4_scaffold_5350_4
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2944..3651)
DNA (708bp) protein (236aa)
DNA topoisomerase type IA zn finger domain protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MCU4_9EURY
DNA topoisomerase type IA zn finger domain protein {ECO:0000313|EMBL:EMA43168.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="
DNA topoisomerase type IA Zn finger domain protein
sw_4_scaffold_5350_5
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3678..3923)
DNA (246bp) protein (82aa)
UPF0213 protein NP_0776A n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Y776_NATPD
hypothetical protein
UPF0213 protein NP_0776A; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) (
sw_4_scaffold_5350_6
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(3972..4127)
DNA (156bp) protein (52aa)
Small CPxCG-related zinc finger protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XMW2_NATM8
small CPxCG-related zinc finger protein
Small CPxCG-related zinc finger protein {ECO:0000313|EMBL:CCQ35227.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomon
sw_4_scaffold_5350_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4194..4889)
DNA (696bp) protein (232aa)
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CZA5_9EURY
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase {ECO:0000313|EMBL:ELZ27772.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Hal
1-(5-phosphoribosyl)-5-amino-4-imidazole-carboxylate (AIR) carboxylase
sw_4_scaffold_5350_8
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5059..5226
DNA (168bp) protein (56aa)
Uncharacterized protein n=2 Tax=Natrialba RepID=L9ZR38_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ06674.1}; TaxID=1227491 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba aegyptia DSM 13077.;"
hypothetical protein
sw_4_scaffold_5350_9
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5285..5986)
DNA (702bp) protein (234aa)
rpiA; ribose-5-phosphate isomerase A (EC:5.3.1.6)
Ribose-5-phosphate isomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; EC=5.3.1.6 {ECO:0000255|HAMAP-Rule:MF_00170};; Phosphoriboisomerase A {ECO:0000255|HAMAP-Rule:MF_00170}; Short=PRI {ECO:0000255|HAMAP-
Ribose-5-phosphate isomerase A n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=RPIA_NATPD
sw_4_scaffold_5350_10
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6064..6264)
DNA (201bp) protein (67aa)
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QN33_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW93828.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
hypothetical protein
sw_4_scaffold_5350_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6428..6757
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MH10_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA43715.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
SWIM zinc finger domain-containing protein
Displaying 11 items

View Taxonomy