ggKbase home page

sw_4_scaffold_494

Search features with annotation key words

Displaying 19 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_4_scaffold_494_1
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1..552
DNA (552bp) protein (184aa)
proteasome subunit alpha (EC:3.4.25.1)
Proteasome subunit alpha {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552}; EC=3.4.25.1 {ECO:0000256|HAMAP-Rule:MF_00289, ECO:0000256|RuleBase:RU000552};; 20S proteasome alpha subunit {
Proteasome subunit alpha n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0LFA0_HALJP
sw_4_scaffold_494_2
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

794..1132
DNA (339bp) protein (113aa)
Nucleotidyltransferase, putative n=1 Tax=Halococcus hamelinensis RepID=UPI00029AAF4A
Uncharacterized protein {ECO:0000313|EMBL:EJN57372.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
sw_4_scaffold_494_3
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1301..1483
DNA (183bp) protein (61aa)
HEPN domain-containing protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0NHR1_9EURY
HEPN domain-containing protein {ECO:0000313|EMBL:EMA56649.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailande
sw_4_scaffold_494_4
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1557..1850
DNA (294bp) protein (98aa)
RNA-associated protein n=1 Tax=Natrialba taiwanensis DSM 12281 RepID=L9ZI23_9EURY
Suspect SCG annotation. See neighboring gene [sw_4_scaffold_494_5].
RNA-associated protein {ECO:0000313|EMBL:ELZ10033.1}; TaxID=1227491 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba aegyptia DSM 13077.;"
rRNA metabolism protein, SBDS family
sw_4_scaffold_494_5
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


1795..2172
DNA (378bp) protein (126aa)
RNA-associated protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MNW7_9EURY
RNA-associated protein
RNA-associated protein {ECO:0000313|EMBL:EMA47038.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus D
sw_4_scaffold_494_6
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2243..3316
DNA (1074bp) protein (358aa)
Uncharacterized protein n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9WM83_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY50487.1}; TaxID=1227498 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus jeotgali DSM 187
hypothetical protein
sw_4_scaffold_494_7
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3522..4814
DNA (1293bp) protein (431aa)
GTPase HflX n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MRH7_9EURY
GTPase HflX {ECO:0000256|HAMAP-Rule:MF_00900}; GTP-binding protein HflX {ECO:0000256|HAMAP-Rule:MF_00900}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriacea
hflX; GTP-binding protein
sw_4_scaffold_494_8

Not on your lists

5123..5503
DNA (381bp) protein (127aa)
Molecular chaperone, small heat shock protein n=1 Tax=uncultured archaeon A07HB70 RepID=V4Y0T5_9ARCH
Molecular chaperone, small heat shock protein {ECO:0000313|EMBL:ESS06181.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
molecular chaperone
sw_4_scaffold_494_9
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5760..6356)
DNA (597bp) protein (199aa)
Probable cyclic pyranopterin monophosphate synthase accessory protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RVC8_HALTV
molybdenum cofactor biosynthesis protein C
Probable cyclic pyranopterin monophosphate synthase accessory protein {ECO:0000256|HAMAP-Rule:MF_01224}; Molybdenum cofactor biosynthesis protein C {ECO:0000256|HAMAP-Rule:MF_01224}; TaxID=543526 spec
sw_4_scaffold_494_10
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6353..7771)
DNA (1419bp) protein (473aa)
Carbohydrate kinase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MXK2_9EURY
Carbohydrate kinase {ECO:0000313|EMBL:EMA50336.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JCM 13
yjeF-like protein, hydroxyethylthiazole kinase-related protein
sw_4_scaffold_494_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7843..8118)
DNA (276bp) protein (92aa)
Acylphosphatase {ECO:0000313|EMBL:EMA44461.1}; EC=3.6.1.7 {ECO:0000313|EMBL:EMA44461.1};; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;"
acylphosphatase (EC:3.6.1.7)
Acylphosphatase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFI5_9EURY
sw_4_scaffold_494_12
unknown

Not on your lists

8303..8560
DNA (258bp) protein (86aa)

This feature has no annotations

sw_4_scaffold_494_13
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8683..9315
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3A4D3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN60313.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
uracil DNA glycosylase
sw_4_scaffold_494_14
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9367..10134)
DNA (768bp) protein (256aa)
Alcohol dehydrogenase GroES domain-containing protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MNU9_9EURY
Alcohol dehydrogenase GroES domain-containing protein {ECO:0000313|EMBL:EMA46115.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" sourc
alcohol dehydrogenase GroES domain-containing protein
sw_4_scaffold_494_15
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10345..11490
DNA (1146bp) protein (382aa)
Succinyl-CoA ligase [ADP-forming] subunit beta {ECO:0000256|HAMAP-Rule:MF_00558}; EC=6.2.1.5 {ECO:0000256|HAMAP-Rule:MF_00558};; Succinyl-CoA synthetase subunit beta {ECO:0000256|HAMAP-Rule:MF_00558};
sucC; succinyl-CoA synthetase subunit beta (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit beta n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N3Z2_9EURY
sw_4_scaffold_494_16
Haloferax mediterranei, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11487..12356
DNA (870bp) protein (290aa)
sucD; succinate--CoA ligase, alpha subunit (ADP-forming) (EC:6.2.1.5)
Succinyl-CoA ligase [ADP-forming] subunit alpha {ECO:0000256|RuleBase:RU000699}; EC=6.2.1.5 {ECO:0000256|RuleBase:RU000699};; TaxID=523841 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales;
Succinyl-CoA ligase [ADP-forming] subunit alpha n=1 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=I3R7E4_HALMT
sw_4_scaffold_494_17
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12463..12852)
DNA (390bp) protein (130aa)
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Putative toxin VapC {ECO:0000256|HAMAP-Rule:MF_
Ribonuclease VapC n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N212_9EURY
putative nucleic acid-binding protein, contains PIN domain
sw_4_scaffold_494_18
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12839..13162)
DNA (324bp) protein (108aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N290_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA51981.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_4_scaffold_494_19
unknown

Not on your lists

comp(13134..13502)
DNA (369bp) protein (123aa)

This feature has no annotations

Displaying 19 items

View Taxonomy