ggKbase | organisms

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %

Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6

Displaying items 801-850 of 1172 in total

contig	# features	sequence size	GC content (%)	Cov	Coding Density (%)
sw_4_scaffold_31192 Species: Ostreococcus tauri (50%)	2	1121 bp	56.56	7.40	91.79
sw_4_scaffold_13643 Species: Triticum aestivum (50%)	2	1317 bp	57.25	6.99	70.84
sw_4_scaffold_4080 Species: Chlamydomonas reinhardtii (50%)	2	2939 bp	55.94	6.36	51.55
sw_4_scaffold_10649 Species: Micromonas pusilla (50%)	2	2587 bp	50.37	7.23	17.74
sw_4_scaffold_12261 Species: Micromonas pusilla (50%)	2	1431 bp	52.55	6.85	58.91
sw_4_scaffold_22689 Species: Musa acuminata (50%)	2	1402 bp	54.64	7.77	75.75
sw_4_scaffold_5465 Species: Micromonas pusilla (100%)	2	3320 bp	54.46	7.11	87.29
sw_4_scaffold_15028 Species: Monoraphidium neglectum (50%)	2	1225 bp	54.78	7.43	85.96
sw_4_scaffold_21672 Species: Physcomitrella patens (50%)	2	1526 bp	50.33	6.03	36.76
sw_4_scaffold_6618 Species: Micromonas pusilla (50%)	2	2184 bp	56.87	6.18	100.00
sw_4_scaffold_10420 Species: Tetraselmis sp. GSL018 (50%)	2	1604 bp	55.49	8.79	66.40
sw_4_scaffold_10421 Species: Micromonas sp. RCC299 (50%)	2	2272 bp	56.21	6.82	96.79
sw_4_scaffold_15952 Species: Volvox carteri (50%)	2	1167 bp	53.30	6.08	85.09
sw_4_scaffold_8463 Species: Bathycoccus prasinos (50%)	2	2463 bp	55.30	6.46	87.70
sw_4_scaffold_10653 Species: Micromonas sp. RCC299 (100%)	2	1580 bp	53.23	7.59	90.57
sw_4_scaffold_27137 Species: Monoraphidium neglectum (50%)	2	1373 bp	60.96	7.72	96.80
sw_4_scaffold_7081 Species: Chlorella variabilis (50%)	2	2610 bp	56.40	7.24	83.10
sw_4_scaffold_8233 Species: Ostreococcus tauri (50%)	2	1891 bp	54.94	8.62	69.96
sw_4_scaffold_10655 Species: Ostreococcus tauri (50%)	2	1580 bp	58.29	6.71	61.14
sw_4_scaffold_18951 Species: Micromonas sp. RCC299 (50%)	2	1906 bp	50.00	5.67	42.50
sw_4_scaffold_12730 Species: Araucaria cunninghamii (50%)	2	1388 bp	58.00	5.98	87.10
sw_4_scaffold_14574 Species: Coffea canephora (50%)	2	1254 bp	60.13	5.42	94.02
sw_4_scaffold_14804 Species: Micromonas pusilla (50%)	2	2126 bp	54.56	6.96	90.17
sw_4_scaffold_12500 Species: Wollemia nobilis (50%)	2	1408 bp	56.53	7.81	76.07
sw_4_scaffold_15727 Species: Ricinus communis (50%)	2	1181 bp	53.18	6.35	95.51
sw_4_scaffold_7778 Species: Coccomyxa subellipsoidea (50%)	2	1966 bp	55.44	7.63	71.87
sw_4_scaffold_15498 Species: Zea mays (50%)	2	1974 bp	51.57	7.80	91.34
sw_4_scaffold_18723 Species: Micromonas pusilla (50%)	2	1024 bp	55.47	7.13	68.55
sw_4_scaffold_19815 Species: Chlorella variabilis (50%)	2	1880 bp	54.36	6.12	63.51
sw_4_scaffold_9392 Species: Coccomyxa subellipsoidea (50%)	2	1724 bp	57.66	7.83	79.00
sw_4_scaffold_12966 Species: Micromonas pusilla (50%)	2	1369 bp	53.62	7.60	49.09
sw_4_scaffold_10431 Species: Micromonas sp. RCC299 (50%)	2	1603 bp	58.14	9.30	85.90
sw_4_scaffold_28438 Species: Chlorella variabilis (50%)	2	1254 bp	58.05	7.10	74.88
sw_4_scaffold_5708 Species: Auxenochlorella protothecoides (50%)	2	2407 bp	57.83	7.23	87.62
sw_4_scaffold_3129 Species: Tetraselmis sp. GSL018 (50%)	2	3987 bp	52.65	7.88	75.85
sw_4_scaffold_13199 Species: Micromonas sp. RCC299 (50%)	2	1352 bp	55.18	7.62	90.31
sw_4_scaffold_34638 Species: Amborella trichopoda (50%)	2	1116 bp	55.38	7.62	98.12
sw_4_scaffold_5018 Species: Chlorella variabilis (50%)	2	2604 bp	56.76	7.45	96.54
sw_4_scaffold_14812 Species: Selaginella moellendorffii (50%)	2	1240 bp	54.11	6.94	98.95
sw_4_scaffold_8015 Species: Tetraselmis sp. GSL018 (50%)	2	1928 bp	56.07	6.90	98.81
sw_4_scaffold_3132 Species: Coffea canephora (50%)	2	3413 bp	56.96	6.86	91.33
sw_4_scaffold_14124 Species: Auxenochlorella protothecoides (50%)	2	2332 bp	55.10	7.20	81.69
sw_4_scaffold_1985 Species: Solanum lycopersicum (50%)	2	4334 bp	51.29	7.45	36.83
sw_4_scaffold_5022 Species: Ostreococcus tauri (50%)	2	2603 bp	53.32	7.38	90.59
sw_4_scaffold_7789 Species: Tetraselmis sp. GSL018 (50%)	2	1964 bp	54.74	6.67	50.71
sw_4_scaffold_8940 Species: Micromonas pusilla (50%)	2	1787 bp	53.39	7.72	57.92
sw_4_scaffold_21749 Species: Ostreococcus tauri (50%)	2	1628 bp	55.04	7.74	87.90
sw_4_scaffold_8019 Species: Ostreococcus tauri (50%)	2	1927 bp	53.87	7.01	75.51
sw_4_scaffold_19863 Species: Chlorella variabilis (100%)	1	1567 bp	61.01	7.21	44.22
sw_4_scaffold_14359 Species: Tetraselmis sp. GSL018 (100%)	1	1268 bp	54.97	8.60	98.90

Displaying items 801-850 of 1172 in total

SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.

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