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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 751-800 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_10164
Species: Volvox carteri (50%)
2 1633 bp 56.71 5.88 89.10
sw_4_scaffold_15003
Species: Selaginella moellendorffii (50%)
2 1227 bp 56.64 6.03 108.80
sw_4_scaffold_6824
Species: Tetraselmis sp. GSL018 (50%)
2 3974 bp 52.97 6.97 98.74
sw_4_scaffold_11549
Species: Selaginella moellendorffii (50%)
2 1495 bp 54.25 8.76 81.67
sw_4_scaffold_6595
Species: Micromonas pusilla (50%)
2 2189 bp 50.66 6.76 63.45
sw_4_scaffold_12932
Species: Coccomyxa subellipsoidea (50%)
2 2354 bp 51.87 6.50 72.90
sw_4_scaffold_5674
Species: Micromonas pusilla (50%)
2 2415 bp 55.36 7.37 80.75
sw_4_scaffold_6826
Species: Micromonas sp. RCC299 (50%)
2 2808 bp 57.37 7.44 101.28
sw_4_scaffold_9821
Species: Brassica napus (50%)
2 2469 bp 58.12 7.25 100.12
sw_4_scaffold_1639
Species: Ostreococcus tauri (50%)
2 4839 bp 55.26 8.87 89.89
sw_4_scaffold_18924
Species: Coccomyxa subellipsoidea (50%)
2 1016 bp 57.28 5.91 96.85
sw_4_scaffold_31096
Species: Brassica oleracea (50%)
2 1149 bp 57.70 7.83 81.98
sw_4_scaffold_6136
Species: Ostreococcus tauri (50%)
2 2303 bp 56.49 6.38 92.88
sw_4_scaffold_17543
Species: Ostreococcus 'lucimarinus' (50%)
2 1629 bp 57.15 6.20 102.76
sw_4_scaffold_18696
Species: Micromonas sp. RCC299 (50%)
2 1632 bp 57.11 6.19 96.88
sw_4_scaffold_7981
Species: Ostreococcus 'lucimarinus' (50%)
2 1934 bp 56.05 6.93 100.05
sw_4_scaffold_32675
Species: Physcomitrella patens (50%)
2 1212 bp 54.54 6.11 98.02
sw_4_scaffold_10865
Species: Physcomitrella patens (50%)
2 2068 bp 53.82 6.77 100.10
sw_4_scaffold_5219
Species: Oryza sativa (50%)
2 2552 bp 54.94 7.37 83.11
sw_4_scaffold_10404
Species: Solanum lycopersicum (50%)
2 2232 bp 54.84 7.30 79.44
sw_4_scaffold_11557
Species: Amborella trichopoda (50%)
2 1494 bp 56.63 7.83 89.76
sw_4_scaffold_15704
Species: Setaria italica (50%)
2 1182 bp 55.84 6.68 77.92
sw_4_scaffold_3845
Species: Monoraphidium neglectum (50%)
2 3037 bp 57.56 8.59 82.88
sw_4_scaffold_6373
Species: Ostreococcus tauri (50%)
2 2242 bp 56.38 6.69 93.00
sw_4_scaffold_16398
Species: Vitis vinifera (50%)
2 1142 bp 56.92 6.30 48.07
sw_4_scaffold_1801
Species: Monoraphidium neglectum (50%)
2 9146 bp 50.21 6.63 100.01
sw_4_scaffold_22631
Species: Chlorella variabilis (50%)
2 1577 bp 54.03 7.80 53.46
sw_4_scaffold_2370
Species: Tetraselmis sp. GSL018 (50%)
2 3964 bp 55.05 7.27 97.02
sw_4_scaffold_18010
Species: Ostreococcus tauri (100%)
2 2025 bp 52.40 5.88 76.00
sw_4_scaffold_19163
Species: Capsella rubella (50%)
2 1004 bp 59.06 7.77 94.42
sw_4_scaffold_9831
Species: Chlamydomonas reinhardtii (50%)
2 2257 bp 57.02 7.22 86.80
sw_4_scaffold_18242
Species: Micromonas sp. RCC299 (50%)
2 1047 bp 56.35 7.35 77.94
sw_4_scaffold_6145
Species: Ostreococcus tauri (50%)
2 2300 bp 55.26 6.61 89.87
sw_4_scaffold_4533
Species: Physcomitrella patens (50%)
2 2767 bp 55.69 7.16 80.01
sw_4_scaffold_7299
Species: Volvox carteri (50%)
2 4410 bp 54.83 6.98 97.69
sw_4_scaffold_9372
Species: Setaria italica (50%)
2 2476 bp 54.97 8.20 70.52
sw_4_scaffold_6378
Species: Physcomitrella patens (50%)
2 2241 bp 51.81 7.94 82.06
sw_4_scaffold_9143
Species: Physcomitrella patens (50%)
2 2307 bp 54.96 8.11 54.49
sw_4_scaffold_14329
Species: Selaginella moellendorffii (50%)
2 2515 bp 56.34 6.12 67.16
sw_4_scaffold_3449
Species: Aegilops tauschii (50%)
2 3244 bp 52.31 6.50 98.12
sw_4_scaffold_9144
Species: Micromonas sp. RCC299 (100%)
2 1758 bp 59.16 6.94 68.26
sw_4_scaffold_9375
Species: Micromonas sp. RCC299 (50%)
2 1726 bp 56.03 5.50 62.40
sw_4_scaffold_10182
Species: Micromonas sp. RCC299 (50%)
2 1631 bp 51.38 5.82 84.79
sw_4_scaffold_7071
Species: Brassica napus (50%)
2 2094 bp 58.07 6.69 81.52
sw_4_scaffold_10644
Species: Gossypium arboreum (50%)
2 1581 bp 51.74 6.20 61.10
sw_4_scaffold_11335
Species: Oryza nivara (50%)
2 2728 bp 53.41 7.18 77.86
sw_4_scaffold_1894
Species: Jatropha curcas (50%)
2 4446 bp 55.15 7.13 88.46
sw_4_scaffold_8686
Species: Selaginella moellendorffii (50%)
2 1826 bp 54.00 6.85 86.58
sw_4_scaffold_17558
Species: Micromonas pusilla (50%)
2 1082 bp 52.59 6.01 97.60
sw_4_scaffold_7304
Species: Wollemia nobilis (50%)
2 2049 bp 49.44 7.71 91.07
Displaying items 751-800 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.