ggKbase home page
Advanced Search
Search Help

SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 701-750 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_7954
Species: Micromonas sp. RCC299 (50%)
2 1940 bp 54.28 8.09 91.86
sw_4_scaffold_15674
Species: Arabidopsis thaliana (50%)
2 1185 bp 55.61 5.91 66.84
sw_4_scaffold_11067
Species: Bathycoccus prasinos (100%)
2 2937 bp 53.76 7.66 89.17
sw_4_scaffold_14523
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1258 bp 59.94 7.63 64.39
sw_4_scaffold_16367
Species: Volvox carteri (50%)
2 2177 bp 54.62 7.58 78.69
sw_4_scaffold_11529
Species: Gossypium raimondii (50%)
2 1497 bp 57.25 7.55 71.94
sw_4_scaffold_6805
Species: Ostreococcus 'lucimarinus' (50%)
2 2143 bp 57.72 7.51 88.75
sw_4_scaffold_5423
Species: Populus trichocarpa (50%)
2 2487 bp 58.10 7.20 93.97
sw_4_scaffold_13143
Species: Selaginella moellendorffii (50%)
2 1356 bp 56.86 5.97 66.59
sw_4_scaffold_2953
Species: Oryza brachyantha (50%)
2 4587 bp 56.51 7.67 97.19
sw_4_scaffold_12223
Species: Micromonas pusilla (50%)
2 2877 bp 54.74 7.09 101.77
sw_4_scaffold_13377
Species: Chlamydomonas reinhardtii (50%)
2 1338 bp 56.28 6.50 82.29
sw_4_scaffold_17294
Species: Physcomitrella patens (50%)
2 1905 bp 55.49 6.82 73.07
sw_4_scaffold_12917
Species: Micromonas sp. RCC299 (50%)
2 1373 bp 50.04 9.32 93.30
sw_4_scaffold_12457
Species: Volvox carteri (50%)
2 1411 bp 54.78 7.16 67.82
sw_4_scaffold_12918
Species: Medicago truncatula (50%)
2 1373 bp 63.51 6.77 72.98
sw_4_scaffold_17757
Species: Monoraphidium neglectum (50%)
2 1072 bp 64.74 7.84 90.11
sw_4_scaffold_29566
Species: Phaseolus vulgaris (50%)
2 1264 bp 59.57 6.17 89.00
sw_4_scaffold_10845
Species: Chlamydomonas reinhardtii (50%)
2 1562 bp 54.61 6.98 70.29
sw_4_scaffold_18219
Species: Tetraselmis sp. GSL018 (50%)
2 1560 bp 54.49 7.12 51.35
sw_4_scaffold_9117
Species: Chlamydomonas reinhardtii (50%)
2 1762 bp 57.55 7.72 88.54
sw_4_scaffold_9809
Species: Volvox carteri (50%)
2 1674 bp 54.42 6.51 74.73
sw_4_scaffold_12690
Species: Micromonas sp. RCC299 (50%)
2 1392 bp 52.08 6.03 84.48
sw_4_scaffold_9580
Species: Ostreococcus 'lucimarinus' (50%)
2 1699 bp 53.38 5.77 44.14
sw_4_scaffold_10618
Species: Jatropha curcas (50%)
2 1583 bp 55.34 7.20 85.09
sw_4_scaffold_14997
Species: Glycine soja (50%)
2 1227 bp 58.76 8.31 90.95
sw_4_scaffold_8429
Species: Medicago truncatula (50%)
2 1861 bp 65.13 8.38 98.66
sw_4_scaffold_4282
Species: Tetraselmis sp. GSL018 (50%)
2 2856 bp 51.79 7.67 66.49
sw_4_scaffold_7739
Species: Chlorella variabilis (50%)
2 1973 bp 56.66 6.74 94.42
sw_4_scaffold_6588
Species: Coccomyxa subellipsoidea (50%)
2 2191 bp 59.01 7.44 89.69
sw_4_scaffold_9813
Species: Oryza rufipogon (50%)
2 3164 bp 54.90 6.86 90.17
sw_4_scaffold_10851
Species: Musa acuminata (50%)
2 1562 bp 56.47 6.85 93.73
sw_4_scaffold_18686
Species: Micromonas sp. RCC299 (50%)
2 1026 bp 56.34 8.28 30.70
sw_4_scaffold_19146
Species: Selaginella moellendorffii (50%)
2 1005 bp 58.91 7.56 97.61
sw_4_scaffold_5205
Species: Glycine soja (50%)
2 2556 bp 54.07 7.67 60.92
sw_4_scaffold_7049
Species: Micromonas sp. RCC299 (50%)
2 4465 bp 55.32 8.20 78.28
sw_4_scaffold_8200
Species: Coccomyxa subellipsoidea (50%)
2 1898 bp 54.11 6.95 94.05
sw_4_scaffold_8431
Species: Monoraphidium neglectum (50%)
2 2892 bp 55.01 7.92 95.23
sw_4_scaffold_11312
Species: Micromonas pusilla (50%)
2 1519 bp 59.32 6.32 78.21
sw_4_scaffold_12696
Species: Coccomyxa subellipsoidea (50%)
2 1392 bp 58.05 8.41 96.34
sw_4_scaffold_6359
Species: Micromonas pusilla (50%)
2 2246 bp 54.85 7.12 68.52
sw_4_scaffold_12466
Species: Chlamydomonas reinhardtii (50%)
2 1411 bp 53.44 5.81 82.07
sw_4_scaffold_17074
Species: Tetraselmis sp. GSL018 (50%)
2 1734 bp 57.32 6.56 68.17
sw_4_scaffold_18226
Species: Physcomitrella patens (50%)
2 1047 bp 54.63 7.35 72.49
sw_4_scaffold_4056
Species: Coccomyxa subellipsoidea (50%)
2 2947 bp 55.65 6.52 85.00
sw_4_scaffold_7974
Species: Micromonas pusilla (50%)
2 2541 bp 51.12 6.73 99.88
sw_4_scaffold_10624
Species: Micromonas sp. RCC299 (50%)
2 1582 bp 56.57 5.63 87.61
sw_4_scaffold_20590
Species: Coffea canephora (50%)
2 1770 bp 55.93 5.93 98.98
sw_4_scaffold_7513
Species: Genlisea aurea (50%)
2 2012 bp 53.93 8.00 95.58
sw_4_scaffold_8435
Species: Volvox carteri (50%)
2 1860 bp 56.29 6.83 75.32
Displaying items 701-750 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.