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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 651-700 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_13114
Species: Physcomitrella patens (50%)
2 1358 bp 54.42 6.85 86.82
sw_4_scaffold_14728
Species: Populus trichocarpa (50%)
2 1245 bp 51.41 6.43 85.54
sw_4_scaffold_16571
Species: Micromonas sp. RCC299 (50%)
2 1133 bp 59.14 7.77 100.35
sw_4_scaffold_3233
Species: Tetraselmis sp. GSL018 (100%)
2 3891 bp 54.41 6.86 94.83
sw_4_scaffold_9083
Species: Theobroma cacao (50%)
2 1767 bp 53.42 7.30 59.93
sw_4_scaffold_9775
Species: Oryza barthii (50%)
2 2137 bp 53.63 7.35 80.86
sw_4_scaffold_11042
Species: Chlamydomonas reinhardtii (50%)
2 1544 bp 59.00 7.84 91.52
sw_4_scaffold_19512
Species: Micromonas pusilla (50%)
2 1647 bp 55.62 6.44 66.67
sw_4_scaffold_5628
Species: Jatropha curcas (50%)
2 2427 bp 51.09 6.96 48.08
sw_4_scaffold_6781
Species: Amborella trichopoda (50%)
2 2147 bp 56.36 6.99 80.20
sw_4_scaffold_18418
Species: Ostreococcus tauri (50%)
2 1503 bp 57.75 5.59 101.80
sw_4_scaffold_16345
Species: Ostreococcus 'lucimarinus' (50%)
2 1145 bp 60.00 6.55 95.90
sw_4_scaffold_8397
Species: Micromonas sp. RCC299 (50%)
2 1864 bp 55.95 7.30 58.10
sw_4_scaffold_11278
Species: Prunus persica (50%)
2 2531 bp 52.82 8.77 50.14
sw_4_scaffold_25618
Species: Micromonas sp. RCC299 (50%)
2 1558 bp 55.84 8.09 100.13
sw_4_scaffold_16809
Species: Monoraphidium neglectum (100%)
2 1121 bp 51.92 5.44 105.44
sw_4_scaffold_17039
Species: Selaginella moellendorffii (50%)
2 1109 bp 52.03 6.40 96.03
sw_4_scaffold_7478
Species: Chlamydomonas reinhardtii (100%)
2 2626 bp 52.63 6.74 100.53
sw_4_scaffold_22416
Species: Micromonas sp. RCC299 (50%)
2 1622 bp 54.50 8.14 85.82
sw_4_scaffold_5405
Species: Micromonas sp. RCC299 (50%)
2 2493 bp 55.19 5.94 64.74
sw_4_scaffold_12203
Species: Micromonas sp. RCC299 (50%)
2 1436 bp 54.74 7.87 88.37
sw_4_scaffold_14047
Species: Citrus sinensis (50%)
2 1289 bp 53.14 6.52 92.40
sw_4_scaffold_4486
Species: Micromonas pusilla (50%)
2 2782 bp 54.82 6.15 37.42
sw_4_scaffold_6790
Species: Triticum aestivum (50%)
2 2145 bp 59.81 10.30 91.61
sw_4_scaffold_11054
Species: Brassica oleracea (50%)
2 1542 bp 55.84 6.87 78.40
sw_4_scaffold_17968
Species: Lupinus angustifolius (50%)
2 1670 bp 56.95 8.20 101.50
sw_4_scaffold_10364
Species: Coccomyxa subellipsoidea (50%)
2 1610 bp 56.15 6.27 85.53
sw_4_scaffold_11055
Species: Physcomitrella patens (50%)
2 1542 bp 56.74 7.65 92.80
sw_4_scaffold_5871
Species: Setaria italica (50%)
2 2363 bp 56.45 7.19 98.14
sw_4_scaffold_7945
Species: Genlisea aurea (50%)
2 1941 bp 54.35 9.33 56.57
sw_4_scaffold_13821
Species: Coccomyxa subellipsoidea (50%)
2 1305 bp 55.71 6.97 61.38
sw_4_scaffold_14051
Species: Micromonas sp. RCC299 (50%)
2 1289 bp 53.76 6.98 89.84
sw_4_scaffold_7485
Species: Ostreococcus 'lucimarinus' (50%)
2 4443 bp 56.00 8.33 87.71
sw_4_scaffold_4720
Species: Wollemia nobilis (50%)
2 2702 bp 57.99 6.11 94.82
sw_4_scaffold_4951
Species: Sorghum bicolor (50%)
2 2623 bp 56.39 7.36 85.67
sw_4_scaffold_12672
Species: Capsella rubella (50%)
2 3143 bp 53.48 6.11 95.45
sw_4_scaffold_13824
Species: Selaginella moellendorffii (50%)
2 1305 bp 60.61 8.20 94.48
sw_4_scaffold_7718
Species: Wollemia nobilis (50%)
2 1976 bp 60.98 6.07 87.75
sw_4_scaffold_8870
Species: Physcomitrella patens (50%)
2 1798 bp 48.72 6.95 62.07
sw_4_scaffold_7719
Species: Monoraphidium neglectum (50%)
2 1976 bp 55.11 7.95 76.52
sw_4_scaffold_13826
Species: Araucaria cunninghamii (50%)
2 1304 bp 55.98 6.90 79.14
sw_4_scaffold_17512
Species: Volvox carteri (50%)
2 1084 bp 53.97 6.73 92.44
sw_4_scaffold_12675
Species: Coccomyxa subellipsoidea (50%)
2 1393 bp 54.85 5.74 99.93
sw_4_scaffold_12676
Species: Bathycoccus prasinos (50%)
2 1393 bp 53.48 7.11 83.13
sw_4_scaffold_7491
Species: Ostreococcus tauri (50%)
2 2015 bp 52.36 8.19 48.98
sw_4_scaffold_7721
Species: Micromonas sp. RCC299 (50%)
2 1975 bp 54.84 8.15 79.59
sw_4_scaffold_11986
Species: Coffea canephora (50%)
2 1457 bp 56.21 6.52 97.60
sw_4_scaffold_14750
Species: Tetraselmis sp. GSL018 (50%)
2 1244 bp 54.10 7.72 92.12
sw_4_scaffold_14981
Species: Micromonas sp. RCC299 (50%)
2 1229 bp 57.36 6.51 88.61
sw_4_scaffold_17285
Species: Citrus clementina (50%)
2 2015 bp 54.09 5.06 42.73
Displaying items 651-700 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.