ggKbase home page
Advanced Search
Search Help

SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 601-650 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_9518
Species: Micromonas sp. RCC299 (50%)
2 1708 bp 53.92 5.91 76.76
sw_4_scaffold_11247
Species: Arabidopsis lyrata (50%)
2 1525 bp 51.21 8.00 80.07
sw_4_scaffold_15164
Species: Bathycoccus prasinos (50%)
2 2061 bp 54.73 7.04 98.69
sw_4_scaffold_19081
Species: Oryza meridionalis (50%)
2 1739 bp 59.40 7.71 91.60
sw_4_scaffold_4680
Species: Ostreococcus 'lucimarinus' (50%)
2 2717 bp 55.58 7.51 97.50
sw_4_scaffold_15857
Species: Musa acuminata (50%)
2 1174 bp 57.24 5.71 82.54
sw_4_scaffold_17239
Species: Ostreococcus tauri (50%)
2 1097 bp 54.79 6.38 83.41
sw_4_scaffold_18391
Species: Micromonas sp. RCC299 (50%)
2 1525 bp 58.36 7.41 93.05
sw_4_scaffold_2916
Species: Medicago truncatula (50%)
2 3560 bp 53.23 7.75 89.07
sw_4_scaffold_12400
Species: Tetraselmis sp. GSL018 (50%)
2 2063 bp 59.57 7.90 83.47
sw_4_scaffold_17470
Species: Solanum tuberosum (50%)
2 1086 bp 59.02 8.84 60.22
sw_4_scaffold_32184
Species: Zea mays (50%)
2 1156 bp 57.96 8.04 75.52
sw_4_scaffold_10791
Species: Micromonas sp. RCC299 (50%)
2 1568 bp 52.81 7.46 101.21
sw_4_scaffold_19420
Species: Coccomyxa subellipsoidea (50%)
2 1902 bp 57.83 7.57 74.45
sw_4_scaffold_9295
Species: Triticum urartu (50%)
2 3033 bp 51.70 6.13 72.01
sw_4_scaffold_7683
Species: Volvox carteri (50%)
2 1982 bp 55.40 6.36 95.96
sw_4_scaffold_9988
Species: Bathycoccus prasinos (50%)
2 1651 bp 58.99 7.09 64.69
sw_4_scaffold_7222
Species: Chlorella variabilis (50%)
2 2065 bp 56.76 6.49 86.44
sw_4_scaffold_9758
Species: Micromonas sp. RCC299 (50%)
2 1678 bp 53.40 6.85 88.14
sw_4_scaffold_15634
Species: Selaginella moellendorffii (50%)
2 1187 bp 51.98 8.00 72.03
sw_4_scaffold_14483
Species: Auxenochlorella protothecoides (50%)
2 1260 bp 56.67 7.30 60.24
sw_4_scaffold_16326
Species: Micromonas pusilla (50%)
2 1146 bp 60.91 6.11 104.19
sw_4_scaffold_20356
Species: Ostreococcus tauri (50%)
2 1475 bp 59.73 8.70 100.27
sw_4_scaffold_6535
Species: Volvox carteri (50%)
2 2202 bp 52.13 7.72 84.33
sw_4_scaffold_7688
Species: Oryza brachyantha (50%)
2 1981 bp 55.07 6.71 93.59
sw_4_scaffold_11721
Species: Zea mays (50%)
2 1481 bp 49.63 7.22 51.45
sw_4_scaffold_21323
Species: Chlamydomonas reinhardtii (50%)
2 1428 bp 54.06 7.14 79.83
sw_4_scaffold_7228
Species: Micromonas sp. RCC299 (50%)
2 2064 bp 53.10 7.27 99.13
sw_4_scaffold_13566
Species: Micromonas sp. RCC299 (50%)
2 1324 bp 55.14 9.14 79.98
sw_4_scaffold_16561
Species: Micromonas sp. RCC299 (50%)
2 1133 bp 55.43 7.86 73.35
sw_4_scaffold_16331
Species: Musa acuminata (50%)
2 1961 bp 55.07 6.32 87.97
sw_4_scaffold_10342
Species: Volvox carteri (50%)
2 1612 bp 52.73 8.75 38.90
sw_4_scaffold_8384
Species: Araucaria cunninghamii (50%)
2 1866 bp 58.31 7.23 78.78
sw_4_scaffold_8845
Species: Volvox carteri (50%)
2 1802 bp 54.99 7.71 90.57
sw_4_scaffold_9536
Species: Chlorella variabilis (50%)
2 1705 bp 55.48 7.33 81.47
sw_4_scaffold_11726
Species: Micromonas pusilla (50%)
2 1480 bp 51.96 7.91 60.81
sw_4_scaffold_8847
Species: Medicago truncatula (50%)
2 1801 bp 57.19 6.66 72.46
sw_4_scaffold_16567
Species: Monoraphidium neglectum (50%)
2 1133 bp 62.93 8.03 32.30
sw_4_scaffold_20391
Species: Chlorella variabilis (50%)
2 1545 bp 54.05 7.12 53.59
sw_4_scaffold_3583
Species: Arabis alpina (50%)
2 3174 bp 58.92 7.47 94.52
sw_4_scaffold_6544
Species: Micromonas sp. RCC299 (50%)
2 2201 bp 53.70 7.00 64.47
sw_4_scaffold_9770
Species: Micromonas sp. RCC299 (50%)
2 2503 bp 55.69 6.67 97.20
sw_4_scaffold_10116
Species: Micromonas pusilla (50%)
2 1639 bp 56.80 7.38 70.65
sw_4_scaffold_10578
Species: Micromonas pusilla (50%)
2 2144 bp 56.11 7.28 84.65
sw_4_scaffold_16569
Species: Tetraselmis sp. GSL018 (50%)
2 1133 bp 57.55 8.38 101.68
sw_4_scaffold_5393
Species: Araucaria cunninghamii (50%)
2 5954 bp 55.98 7.78 80.37
sw_4_scaffold_17260
Species: Monoraphidium neglectum (50%)
2 1096 bp 54.65 7.76 87.59
sw_4_scaffold_18182
Species: Micromonas sp. RCC299 (50%)
2 1050 bp 53.33 8.38 77.71
sw_4_scaffold_11731
Species: Citrus clementina (50%)
2 1479 bp 59.70 6.83 109.74
sw_4_scaffold_12423
Species: Volvox carteri (50%)
2 2987 bp 57.52 6.96 74.32
Displaying items 601-650 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.