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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 551-600 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_9268
Species: Triticum aestivum (50%)
2 1740 bp 60.11 6.95 61.90
sw_4_scaffold_9960
Species: Monoraphidium neglectum (50%)
2 1655 bp 55.47 11.12 53.66
sw_4_scaffold_10306
Species: Coccomyxa subellipsoidea (50%)
2 1616 bp 60.27 7.80 88.18
sw_4_scaffold_11228
Species: Chlorella variabilis (50%)
2 1526 bp 53.01 7.34 93.58
sw_4_scaffold_19062
Species: Volvox carteri (50%)
2 1009 bp 57.48 6.84 84.44
sw_4_scaffold_24260
Species: Micromonas pusilla (50%)
2 1344 bp 58.48 4.99 95.31
sw_4_scaffold_6735
Species: Monoraphidium neglectum (50%)
2 2158 bp 57.46 7.00 68.95
sw_4_scaffold_12150
Species: Selaginella moellendorffii (50%)
2 1443 bp 55.65 7.00 31.60
sw_4_scaffold_9962
Species: Tetraselmis sp. GSL018 (50%)
2 1655 bp 58.85 8.16 68.88
sw_4_scaffold_10079
Species: Eutrema salsugineum (50%)
2 1643 bp 57.46 8.64 97.32
sw_4_scaffold_7890
Species: Tetraselmis sp. GSL018 (50%)
2 1950 bp 52.72 6.82 64.31
sw_4_scaffold_13075
Species: Chlorella variabilis (50%)
2 1361 bp 52.24 9.33 53.34
sw_4_scaffold_13767
Species: Genlisea aurea (50%)
2 1308 bp 54.43 7.95 52.75
sw_4_scaffold_3974
Species: Chlamydomonas reinhardtii (50%)
2 4143 bp 52.81 6.69 100.51
sw_4_scaffold_10310
Species: Chlamydomonas reinhardtii (50%)
2 2940 bp 51.77 7.89 75.00
sw_4_scaffold_12615
Species: Bathycoccus prasinos (50%)
2 2094 bp 54.39 4.92 60.46
sw_4_scaffold_13076
Species: Pandanus utilis (50%)
2 1361 bp 54.22 6.10 59.29
sw_4_scaffold_15380
Species: Prunus persica (50%)
2 1204 bp 55.65 7.06 53.57
sw_4_scaffold_19067
Species: Monoraphidium neglectum (50%)
2 1009 bp 53.72 6.05 54.71
sw_4_scaffold_3554
Species: Physcomitrella patens (50%)
2 3980 bp 56.28 7.19 88.34
sw_4_scaffold_9504
Species: Micromonas sp. RCC299 (50%)
2 1709 bp 53.83 7.14 78.29
sw_4_scaffold_11695
Species: Coccomyxa subellipsoidea (50%)
2 1483 bp 53.81 8.36 63.32
sw_4_scaffold_6510
Species: Cucumis sativus (50%)
2 2208 bp 56.75 6.11 99.18
sw_4_scaffold_10083
Species: Brassica napus (50%)
2 1642 bp 55.91 7.73 87.33
sw_4_scaffold_13079
Species: Setaria italica (50%)
2 1361 bp 57.90 7.49 91.26
sw_4_scaffold_29080
Species: Coffea canephora (50%)
2 1146 bp 57.16 7.77 90.05
sw_4_scaffold_9277
Species: Ostreococcus tauri (50%)
2 1739 bp 55.49 6.96 59.69
sw_4_scaffold_11236
Species: Ostreococcus 'lucimarinus' (50%)
2 1526 bp 54.59 5.90 92.99
sw_4_scaffold_14231
Species: Coccomyxa subellipsoidea (50%)
2 1276 bp 54.86 6.19 92.16
sw_4_scaffold_5821
Species: Ostreococcus tauri (50%)
2 2835 bp 55.70 6.67 81.59
sw_4_scaffold_12391
Species: Eucalyptus grandis (50%)
2 1418 bp 53.60 6.70 104.94
sw_4_scaffold_13082
Species: Micromonas sp. RCC299 (50%)
2 1361 bp 60.10 6.10 90.60
sw_4_scaffold_16308
Species: Selaginella moellendorffii (50%)
2 2093 bp 55.38 7.45 56.19
sw_4_scaffold_18843
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1019 bp 61.73 7.85 62.12
sw_4_scaffold_25450
Species: Tetraselmis sp. GSL018 (50%)
2 1212 bp 60.40 6.52 100.99
sw_4_scaffold_6977
Species: Physcomitrella patens (50%)
2 2110 bp 54.93 9.34 94.41
sw_4_scaffold_1654
Species: Micromonas sp. RCC299 (50%)
2 4817 bp 54.87 8.82 88.44
sw_4_scaffold_8360
Species: Ostreococcus 'lucimarinus' (50%)
2 1869 bp 55.11 7.44 88.76
sw_4_scaffold_9513
Species: Micromonas sp. RCC299 (50%)
2 1708 bp 52.46 8.49 97.31
sw_4_scaffold_13547
Species: Ostreococcus 'lucimarinus' (50%)
2 1325 bp 57.66 7.47 86.26
sw_4_scaffold_6980
Species: Ipomoea batatas (50%)
2 2109 bp 60.60 7.21 78.38
sw_4_scaffold_9976
Species: Ostreococcus 'lucimarinus' (50%)
2 2283 bp 56.68 7.80 68.33
sw_4_scaffold_13548
Species: Micromonas pusilla (50%)
2 1981 bp 59.67 6.92 63.15
sw_4_scaffold_7673
Species: Ostreococcus 'lucimarinus' (50%)
2 2722 bp 58.08 6.80 98.31
sw_4_scaffold_14932
Species: Tetraselmis sp. GSL018 (50%)
2 1232 bp 57.79 6.25 77.44
sw_4_scaffold_5139
Species: Coccomyxa subellipsoidea (50%)
2 2572 bp 56.42 7.97 97.98
sw_4_scaffold_7904
Species: Amborella trichopoda (50%)
2 1948 bp 55.44 9.34 95.64
sw_4_scaffold_10094
Species: Coffea canephora (50%)
2 1641 bp 53.93 6.58 88.85
sw_4_scaffold_11477
Species: Oryza nivara (50%)
2 3064 bp 51.86 6.36 34.07
sw_4_scaffold_16777
Species: Ostreococcus tauri (50%)
2 1123 bp 54.32 6.32 95.64
Displaying items 551-600 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.