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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 501-550 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_18809
Species: Tetraselmis sp. GSL018 (50%)
2 1021 bp 58.37 5.68 98.14
sw_4_scaffold_3037
Species: Oryza punctata (50%)
2 3476 bp 52.88 7.11 94.25
sw_4_scaffold_9707
Species: Capsella rubella (50%)
2 1685 bp 59.47 10.45 94.72
sw_4_scaffold_10284
Species: Monoraphidium neglectum (50%)
2 1619 bp 57.63 7.23 99.69
sw_4_scaffold_16275
Species: Micromonas sp. RCC299 (50%)
2 1820 bp 56.65 7.64 96.92
sw_4_scaffold_2763
Species: Micromonas sp. RCC299 (50%)
2 3661 bp 54.85 7.76 32.86
sw_4_scaffold_14201
Species: Ostreococcus 'lucimarinus' (50%)
2 1278 bp 54.54 7.51 84.51
sw_4_scaffold_16276
Species: Physcomitrella patens (50%)
2 1958 bp 54.90 6.49 94.99
sw_4_scaffold_15817
Species: Phaseolus vulgaris (50%)
2 1176 bp 68.11 7.74 89.03
sw_4_scaffold_23116
Species: Ostreococcus 'lucimarinus' (50%)
2 1564 bp 62.92 7.99 91.69
sw_4_scaffold_27640
Species: Erythranthe guttata (50%)
2 1766 bp 52.94 7.87 41.28
sw_4_scaffold_7178
Species: Ostreococcus tauri (50%)
2 2072 bp 55.02 9.03 39.82
sw_4_scaffold_12363
Species: Coffea canephora (50%)
2 1885 bp 59.89 6.95 86.90
sw_4_scaffold_14206
Species: Medicago truncatula (50%)
2 1278 bp 54.69 6.89 77.93
sw_4_scaffold_3954
Species: Oryza meridionalis (50%)
2 2992 bp 52.47 5.85 78.71
sw_4_scaffold_5335
Species: Chlorella variabilis (50%)
2 2517 bp 53.48 7.19 76.76
sw_4_scaffold_6257
Species: Physcomitrella patens (50%)
2 2269 bp 51.43 7.67 39.67
sw_4_scaffold_8330
Species: Ostreococcus 'lucimarinus' (50%)
2 1875 bp 60.59 6.51 99.52
sw_4_scaffold_9252
Species: Bathycoccus prasinos (50%)
2 1741 bp 57.09 6.84 96.67
sw_4_scaffold_5798
Species: Ostreococcus 'lucimarinus' (50%)
2 3160 bp 54.97 8.07 78.23
sw_4_scaffold_12134
Species: Coccomyxa subellipsoidea (50%)
2 2248 bp 57.47 6.41 98.35
sw_4_scaffold_8795
Species: Amborella trichopoda (50%)
2 1809 bp 60.86 6.74 96.85
sw_4_scaffold_4648
Species: Auxenochlorella protothecoides (50%)
2 3468 bp 52.74 7.61 98.70
sw_4_scaffold_6491
Species: Ostreococcus tauri (50%)
2 2214 bp 55.24 6.14 94.04
sw_4_scaffold_12137
Species: Ostreococcus tauri (50%)
2 1973 bp 58.24 7.10 88.19
sw_4_scaffold_14672
Species: Phaseolus vulgaris (50%)
2 1249 bp 56.85 8.81 95.36
sw_4_scaffold_16746
Species: Ostreococcus tauri (50%)
2 1124 bp 58.19 5.60 55.78
sw_4_scaffold_4420
Species: Tetraselmis sp. GSL018 (50%)
2 2806 bp 56.52 6.52 56.77
sw_4_scaffold_10759
Species: Chlamydomonas reinhardtii (50%)
2 1571 bp 54.68 6.56 83.83
sw_4_scaffold_11910
Species: Triticum aestivum (50%)
2 1463 bp 55.84 6.29 77.10
sw_4_scaffold_13062
Species: Ostreococcus tauri (50%)
2 1362 bp 52.94 7.20 92.95
sw_4_scaffold_7417
Species: Populus trichocarpa (50%)
2 2027 bp 55.01 7.20 85.69
sw_4_scaffold_9952
Species: Glycine max (50%)
2 2483 bp 59.00 8.86 51.35
sw_4_scaffold_12141
Species: Arabis alpina (50%)
2 1949 bp 55.67 7.29 86.97
sw_4_scaffold_13063
Species: Bathycoccus prasinos (50%)
2 1362 bp 55.58 7.34 75.55
sw_4_scaffold_16750
Species: Volvox carteri (50%)
2 1124 bp 57.03 6.05 89.95
sw_4_scaffold_3199
Species: Tetraselmis sp. GSL018 (50%)
2 3375 bp 50.46 7.17 93.16
sw_4_scaffold_8109
Species: Ostreococcus tauri (50%)
2 1913 bp 52.12 8.21 87.66
sw_4_scaffold_14216
Species: Medicago truncatula (50%)
2 1880 bp 54.20 7.50 64.47
sw_4_scaffold_14908
Species: Selaginella moellendorffii (50%)
2 1616 bp 57.49 7.36 100.06
sw_4_scaffold_9723
Species: Musa acuminata (50%)
2 1683 bp 58.41 7.07 98.22
sw_4_scaffold_14448
Species: Selaginella moellendorffii (50%)
2 1262 bp 57.69 6.89 53.72
sw_4_scaffold_6037
Species: Physcomitrella patens (50%)
2 2324 bp 55.29 6.45 69.19
sw_4_scaffold_15370
Species: Micromonas sp. RCC299 (50%)
2 1204 bp 60.63 8.39 63.29
sw_4_scaffold_17444
Species: Micromonas pusilla (50%)
2 1088 bp 53.31 7.54 95.68
sw_4_scaffold_6269
Species: Picea sitchensis (50%)
2 2265 bp 55.32 7.42 94.17
sw_4_scaffold_6960
Species: Ostreococcus tauri (50%)
2 2114 bp 51.47 7.14 55.35
sw_4_scaffold_12377
Species: Ostreococcus tauri (50%)
2 1419 bp 57.86 5.57 88.79
sw_4_scaffold_10303
Species: Triticum aestivum (50%)
2 1616 bp 56.06 7.18 102.48
sw_4_scaffold_16525
Species: Solanum tuberosum (50%)
2 1136 bp 53.87 6.25 85.83
Displaying items 501-550 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.