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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 451-500 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_5305
Species: Physcomitrella patens (50%)
2 2524 bp 55.82 6.62 96.16
sw_4_scaffold_6919
Species: Coccomyxa subellipsoidea (100%)
2 2120 bp 56.65 5.52 68.77
sw_4_scaffold_11412
Species: Hordeum vulgare (50%)
2 2183 bp 52.86 7.15 51.95
sw_4_scaffold_14408
Species: Bathycoccus prasinos (100%)
2 1266 bp 54.42 6.56 67.30
sw_4_scaffold_16020
Species: Bathycoccus prasinos (50%)
2 1164 bp 58.16 7.30 111.34
sw_4_scaffold_20057
Species: Eucalyptus grandis (50%)
2 1606 bp 51.31 6.72 99.56
sw_4_scaffold_9915
Species: Micromonas sp. RCC299 (50%)
2 3249 bp 59.59 6.53 93.17
sw_4_scaffold_10953
Species: Micromonas pusilla (50%)
2 2507 bp 54.25 6.98 83.29
sw_4_scaffold_5307
Species: Ostreococcus tauri (50%)
2 2524 bp 56.18 6.18 87.84
sw_4_scaffold_11645
Species: Ostreococcus 'lucimarinus' (50%)
2 1487 bp 54.61 6.39 84.53
sw_4_scaffold_23011
Species: Citrus clementina (50%)
2 1589 bp 56.14 5.73 99.31
sw_4_scaffold_7612
Species: Bathycoccus prasinos (50%)
2 1994 bp 54.76 7.52 55.97
sw_4_scaffold_19019
Species: Citrus sinensis (50%)
2 1011 bp 52.23 8.61 45.99
sw_4_scaffold_5770
Species: Physcomitrella patens (50%)
2 2387 bp 59.78 6.41 50.78
sw_4_scaffold_7614
Species: Coccomyxa subellipsoidea (50%)
2 1993 bp 57.55 6.47 102.81
sw_4_scaffold_14645
Species: Chlorella variabilis (50%)
2 1954 bp 54.09 8.09 65.10
sw_4_scaffold_16258
Species: Micromonas pusilla (50%)
2 1150 bp 53.83 5.39 60.00
sw_4_scaffold_15799
Species: Tetraselmis sp. GSL018 (50%)
2 1964 bp 55.75 5.50 56.21
sw_4_scaffold_17872
Species: Coccomyxa subellipsoidea (50%)
2 1066 bp 53.00 7.50 79.08
sw_4_scaffold_9231
Species: Ostreococcus tauri (100%)
2 1745 bp 52.55 8.77 79.43
sw_4_scaffold_16491
Species: Micromonas pusilla (50%)
2 1794 bp 60.20 7.36 61.04
sw_4_scaffold_16952
Species: Selaginella moellendorffii (50%)
2 1113 bp 59.75 6.65 100.00
sw_4_scaffold_18796
Species: Physcomitrella patens (50%)
2 1622 bp 58.14 6.41 46.24
sw_4_scaffold_3341
Species: Micromonas sp. RCC299 (50%)
2 4060 bp 51.82 6.82 78.77
sw_4_scaffold_5777
Species: Ostreococcus tauri (50%)
2 2387 bp 56.10 7.00 83.45
sw_4_scaffold_9001
Species: Ostreococcus tauri (50%)
2 1779 bp 55.37 6.46 98.15
sw_4_scaffold_8081
Species: Volvox carteri (50%)
2 1918 bp 56.88 7.92 76.96
sw_4_scaffold_10271
Species: Eucalyptus grandis (50%)
2 2444 bp 54.83 7.45 86.91
sw_4_scaffold_14419
Species: Micromonas pusilla (50%)
2 1265 bp 55.10 9.25 60.24
sw_4_scaffold_13499
Species: Selaginella moellendorffii (50%)
2 1329 bp 48.91 7.83 34.76
sw_4_scaffold_14650
Species: Tetraselmis sp. GSL018 (50%)
2 1250 bp 62.08 7.04 113.28
sw_4_scaffold_24123
Species: Ostreococcus tauri (50%)
2 2029 bp 53.28 6.36 74.52
sw_4_scaffold_10273
Species: Chlorella variabilis (50%)
2 2577 bp 56.31 6.83 77.30
sw_4_scaffold_11656
Species: Coccomyxa subellipsoidea (50%)
2 2231 bp 59.35 8.43 63.60
sw_4_scaffold_15803
Species: Solanum lycopersicum (50%)
2 1177 bp 54.12 7.14 69.07
sw_4_scaffold_10274
Species: Selaginella moellendorffii (50%)
2 1620 bp 50.93 7.41 61.30
sw_4_scaffold_7163
Species: Micromonas pusilla (50%)
2 2075 bp 59.81 7.52 87.33
sw_4_scaffold_8779
Species: Bathycoccus prasinos (50%)
2 1811 bp 54.83 7.95 98.56
sw_4_scaffold_15346
Species: Micromonas pusilla (50%)
2 1205 bp 57.43 4.65 55.52
sw_4_scaffold_13734
Species: Monoraphidium neglectum (50%)
2 1310 bp 54.50 6.95 97.33
sw_4_scaffold_14656
Species: Micromonas pusilla (50%)
2 1249 bp 55.32 6.89 49.72
sw_4_scaffold_10971
Species: Micromonas sp. RCC299 (50%)
2 1551 bp 55.13 7.22 92.26
sw_4_scaffold_14889
Species: Volvox carteri (50%)
2 1599 bp 59.60 8.13 97.56
sw_4_scaffold_13737
Species: Picea sitchensis (50%)
2 1310 bp 53.66 7.02 100.76
sw_4_scaffold_11202
Species: Solanum lycopersicum (50%)
2 1529 bp 51.28 6.61 94.57
sw_4_scaffold_5558
Species: Leersia perrieri (50%)
2 2450 bp 56.69 6.98 90.86
sw_4_scaffold_9936
Species: Volvox carteri (50%)
2 1657 bp 54.68 7.48 64.63
sw_4_scaffold_12356
Species: Phaseolus vulgaris (50%)
2 1423 bp 55.09 6.89 78.22
sw_4_scaffold_4868
Species: Micromonas sp. RCC299 (50%)
2 2649 bp 52.10 7.51 97.74
sw_4_scaffold_18117
Species: Ostreococcus tauri (50%)
2 1938 bp 52.01 5.57 100.16
Displaying items 451-500 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.