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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 401-450 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_8510
Species: Micromonas pusilla (50%)
2 1849 bp 55.33 8.00 57.11
sw_4_scaffold_13235
Species: Bathycoccus prasinos (50%)
2 1349 bp 56.49 6.45 82.51
sw_4_scaffold_18074
Species: Micromonas pusilla (50%)
2 1055 bp 52.32 8.15 84.74
sw_4_scaffold_19226
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1002 bp 54.69 6.79 81.44
sw_4_scaffold_33181
Species: Erythranthe guttata (50%)
2 1324 bp 50.23 5.66 42.14
sw_4_scaffold_5747
Species: Cucumis sativus (50%)
2 2393 bp 55.58 8.11 98.41
sw_4_scaffold_7129
Species: Citrus clementina (50%)
2 2083 bp 54.39 6.87 79.07
sw_4_scaffold_13928
Species: Coccomyxa subellipsoidea (50%)
2 1298 bp 59.55 6.63 82.97
sw_4_scaffold_5287
Species: Zea mays (50%)
2 2531 bp 52.55 7.66 45.52
sw_4_scaffold_6439
Species: Chlorella variabilis (50%)
2 2227 bp 51.95 6.24 75.44
sw_4_scaffold_7591
Species: Amborella trichopoda (50%)
2 1998 bp 56.21 7.31 97.00
sw_4_scaffold_8743
Species: Volvox carteri (50%)
2 1816 bp 55.84 6.22 60.30
sw_4_scaffold_9435
Species: Tetraselmis sp. GSL018 (50%)
2 1719 bp 57.65 6.22 83.94
sw_4_scaffold_9897
Species: Physcomitrella patens (50%)
2 3274 bp 55.86 7.09 96.67
sw_4_scaffold_8054
Species: Coffea canephora (50%)
2 1922 bp 52.71 8.64 42.77
sw_4_scaffold_13700
Species: Zea mays (50%)
2 1313 bp 57.73 7.39 67.86
sw_4_scaffold_6903
Species: Volvox carteri (50%)
2 2122 bp 52.69 7.16 89.35
sw_4_scaffold_13932
Species: Tetraselmis sp. GSL018 (50%)
2 1297 bp 54.66 7.79 75.87
sw_4_scaffold_16005
Species: Vitis vinifera (50%)
2 1165 bp 61.63 8.07 62.06
sw_4_scaffold_7365
Species: Tetraselmis sp. GSL018 (50%)
2 2038 bp 59.03 8.00 98.92
sw_4_scaffold_8517
Species: Brassica oleracea (50%)
2 1849 bp 53.00 7.19 96.21
sw_4_scaffold_13933
Species: Brassica oleracea (50%)
2 2200 bp 52.68 8.27 48.95
sw_4_scaffold_9900
Species: Araucaria cunninghamii (50%)
2 3910 bp 54.17 6.85 36.37
sw_4_scaffold_11169
Species: Micromonas sp. RCC299 (50%)
2 1532 bp 53.72 6.33 85.77
sw_4_scaffold_20958
Species: Leersia perrieri (50%)
2 1463 bp 57.01 7.31 103.96
sw_4_scaffold_7829
Species: Tetraselmis sp. GSL018 (50%)
2 1959 bp 58.70 6.94 101.53
sw_4_scaffold_11400
Species: Citrus clementina (50%)
2 1510 bp 58.41 6.89 62.98
sw_4_scaffold_9211
Species: Amborella trichopoda (50%)
2 1748 bp 56.69 7.55 72.77
sw_4_scaffold_10710
Species: Prunus persica (50%)
2 1575 bp 55.17 8.13 75.24
sw_4_scaffold_11401
Species: Volvox carteri (50%)
2 1510 bp 53.64 6.89 41.32
sw_4_scaffold_10481
Species: Micromonas pusilla (50%)
2 1597 bp 51.28 7.20 97.12
sw_4_scaffold_20969
Species: Micromonas sp. RCC299 (50%)
2 2332 bp 54.63 6.95 92.37
sw_4_scaffold_10021
Species: Brassica rapa (50%)
2 1648 bp 50.85 7.10 62.62
sw_4_scaffold_12096
Species: Ostreococcus 'lucimarinus' (50%)
2 1447 bp 56.19 7.26 50.17
sw_4_scaffold_12788
Species: Monoraphidium neglectum (50%)
2 1384 bp 55.20 5.64 77.60
sw_4_scaffold_14630
Species: Citrus clementina (50%)
2 1251 bp 56.27 6.47 51.80
sw_4_scaffold_9677
Species: Gossypium raimondii (50%)
2 2225 bp 53.53 7.10 40.85
sw_4_scaffold_16705
Species: Physcomitrella patens (50%)
2 1126 bp 56.57 6.84 91.65
sw_4_scaffold_21957
Species: Physcomitrella patens (50%)
2 1341 bp 55.18 6.49 73.83
sw_4_scaffold_5760
Species: Physcomitrella patens (50%)
2 2389 bp 55.84 9.08 74.97
sw_4_scaffold_6451
Species: Micromonas sp. RCC299 (50%)
2 2225 bp 53.48 7.01 94.52
sw_4_scaffold_16706
Species: Monoraphidium neglectum (50%)
2 1126 bp 53.37 7.73 80.46
sw_4_scaffold_2627
Species: Micromonas sp. RCC299 (50%)
2 3754 bp 54.69 6.71 96.38
sw_4_scaffold_10716
Species: Helicosporidium sp. ATCC 50920 (50%)
2 1575 bp 52.44 7.68 67.05
sw_4_scaffold_5531
Species: Coccomyxa subellipsoidea (50%)
2 2458 bp 52.20 7.53 78.97
sw_4_scaffold_14173
Species: Arabidopsis thaliana (50%)
2 1280 bp 53.44 9.77 69.14
sw_4_scaffold_20045
Species: Micromonas pusilla (50%)
2 1867 bp 55.12 7.98 52.06
sw_4_scaffold_7839
Species: Micromonas pusilla (50%)
2 2635 bp 55.90 6.72 100.99
sw_4_scaffold_12563
Species: Micromonas sp. RCC299 (50%)
2 1402 bp 58.77 6.85 78.74
sw_4_scaffold_11411
Species: Populus trichocarpa (50%)
2 1510 bp 55.96 8.08 92.78
Displaying items 401-450 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.