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SW_4_Viridiplantae_55_7

SW_4_Eukaryota_55_7
In projects: SW_4

Consensus taxonomy: Eukaryota

Taxonomy override: Eukaryote

Metagenomic Context

Parent: SW_4_UNK

Properties

Avg. coverage: 7.23 Longest contig: 11.25 Kbp Bin length: 2.66 Mbp GC content: 55.09 %
Contigs count: 1172 Features count: 2664 rRNAs count: 0 tRNAs count: 0

Genome completeness

partial RP 24 / 55 MC: 8 BSCG 15 / 51 MC: 1 ASCG 15 / 38 MC: 6
Displaying items 351-400 of 1172 in total
contig # features sequence size GC content (%) Cov Coding Density (%)
sw_4_scaffold_14367
Species: Coccomyxa subellipsoidea (50%)
2 1268 bp 51.10 8.83 35.02
sw_4_scaffold_16210
Species: Medicago truncatula (50%)
2 2280 bp 50.88 7.59 53.95
sw_4_scaffold_24943
Species: Micromonas pusilla (50%)
2 1358 bp 57.95 6.48 102.73
sw_4_scaffold_5497
Species: Micromonas pusilla (50%)
2 2466 bp 57.22 8.39 70.44
sw_4_scaffold_12987
Species: Morus notabilis (50%)
2 1367 bp 61.38 6.66 92.61
sw_4_scaffold_6189
Species: Tetraselmis sp. GSL018 (50%)
2 2288 bp 55.81 8.39 91.26
sw_4_scaffold_9647
Species: Ostreococcus tauri (50%)
2 1690 bp 52.49 7.87 83.43
sw_4_scaffold_12298
Species: Chlorella variabilis (50%)
2 1428 bp 54.13 7.77 75.00
sw_4_scaffold_18289
Species: Ostreococcus tauri (50%)
2 1044 bp 59.20 7.28 57.18
sw_4_scaffold_12069
Species: Brassica rapa (50%)
2 1450 bp 51.59 8.55 93.93
sw_4_scaffold_9419
Species: Coccomyxa subellipsoidea (50%)
2 2255 bp 56.14 7.62 92.33
sw_4_scaffold_11148
Species: Phaseolus vulgaris (50%)
2 1533 bp 56.23 6.91 88.45
sw_4_scaffold_18752
Species: Selaginella moellendorffii (50%)
2 1923 bp 55.54 7.28 71.45
sw_4_scaffold_7115
Species: Helicosporidium sp. ATCC 50920 (50%)
2 2086 bp 58.05 6.47 65.29
sw_4_scaffold_7577
Species: Brassica oleracea (50%)
2 2000 bp 55.85 9.25 50.55
sw_4_scaffold_8499
Species: Tetraselmis sp. GSL018 (50%)
2 3405 bp 51.13 6.55 57.44
sw_4_scaffold_9881
Species: Micromonas sp. RCC299 (50%)
2 3250 bp 53.29 6.98 70.43
sw_4_scaffold_4582
Species: Selaginella moellendorffii (50%)
2 2752 bp 57.96 8.21 98.98
sw_4_scaffold_15759
Species: Amborella trichopoda (50%)
2 1179 bp 58.27 9.33 77.10
sw_4_scaffold_4121
Species: Micromonas pusilla (50%)
2 3445 bp 53.03 7.69 95.18
sw_4_scaffold_9652
Species: Micromonas pusilla (50%)
2 1690 bp 50.00 8.17 73.67
sw_4_scaffold_11151
Species: Micromonas sp. RCC299 (50%)
2 1533 bp 57.40 6.72 94.91
sw_4_scaffold_22875
Species: Picea sitchensis (50%)
2 1505 bp 53.29 6.84 50.23
sw_4_scaffold_11383
Species: Ostreococcus tauri (50%)
2 2054 bp 54.19 7.84 83.25
sw_4_scaffold_1484
Species: Tetraselmis sp. GSL018 (50%)
2 5745 bp 52.38 7.28 100.42
sw_4_scaffold_11845
Species: Micromonas pusilla (50%)
2 2221 bp 56.33 6.26 92.39
sw_4_scaffold_13227
Species: Arabidopsis thaliana (50%)
2 2712 bp 52.51 7.34 87.50
sw_4_scaffold_15994
Species: Micromonas pusilla (50%)
2 1165 bp 50.99 8.58 103.52
sw_4_scaffold_17145
Species: Micromonas sp. RCC299 (50%)
2 1103 bp 59.20 7.43 89.48
sw_4_scaffold_4126
Species: Physcomitrella patens (50%)
2 2918 bp 57.13 7.47 97.88
sw_4_scaffold_4127
Species: Ostreococcus 'lucimarinus' (50%)
2 2918 bp 50.93 7.71 44.21
sw_4_scaffold_8044
Species: Physcomitrella patens (50%)
2 1923 bp 55.49 7.02 89.24
sw_4_scaffold_12308
Species: Wollemia nobilis (50%)
2 1427 bp 56.48 5.96 77.15
sw_4_scaffold_14612
Species: Tetraselmis sp. GSL018 (50%)
2 1252 bp 50.96 6.47 81.71
sw_4_scaffold_7354
Species: Ostreococcus tauri (50%)
2 2040 bp 54.26 6.91 81.76
sw_4_scaffold_10004
Species: Coccomyxa subellipsoidea (50%)
2 2831 bp 54.12 7.77 100.46
sw_4_scaffold_13692
Species: Chlorella variabilis (50%)
2 1313 bp 57.88 7.39 69.00
sw_4_scaffold_16688
Species: Physcomitrella patens (50%)
2 1126 bp 62.52 6.13 88.72
sw_4_scaffold_19960
Species: Eucalyptus grandis (50%)
2 1929 bp 59.05 7.98 60.03
sw_4_scaffold_7816
Species: Selaginella moellendorffii (50%)
2 1960 bp 56.38 7.86 71.02
sw_4_scaffold_12540
Species: Chlorella variabilis (50%)
2 1405 bp 54.09 8.90 92.03
sw_4_scaffold_8047
Species: Wollemia nobilis (50%)
2 1923 bp 50.29 7.07 82.84
sw_4_scaffold_10237
Species: Micromonas pusilla (50%)
2 1624 bp 54.86 5.73 96.06
sw_4_scaffold_12541
Species: Auxenochlorella protothecoides (50%)
2 1405 bp 59.00 8.54 66.62
sw_4_scaffold_11620
Species: Volvox carteri (50%)
2 2125 bp 57.22 6.12 82.87
sw_4_scaffold_6667
Species: Ostreococcus 'lucimarinus' (50%)
2 2172 bp 56.12 6.77 38.40
sw_4_scaffold_7127
Species: Ostreococcus 'lucimarinus' (50%)
2 2083 bp 50.79 6.82 91.89
sw_4_scaffold_11621
Species: Micromonas pusilla (50%)
2 1489 bp 57.56 6.25 74.55
sw_4_scaffold_21872
Species: Populus trichocarpa (50%)
2 1474 bp 57.46 7.39 102.58
sw_4_scaffold_8280
Species: Solanum lycopersicum (50%)
2 1884 bp 59.34 7.96 96.34
Displaying items 351-400 of 1172 in total

Ribosomal proteins shown here were identified using keyword searches of all annotations.

The SCGs are found by conducting USEARCH with a custom database.

The SCGs are found by conducting USEARCH with a custom database.