ggKbase home page

sw_5_scaffold_103

Search features with annotation key words

Displaying items 1-30 of 64 in total
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_103_1
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2..1447
DNA (1446bp) protein (482aa)
Blue copper domain protein n=1 Tax=Halorubrum terrestre JCM 10247 RepID=M0DU20_9EURY
Blue copper domain protein {ECO:0000313|EMBL:ELZ38187.1}; TaxID=1227486 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum terrestre JCM 102
plastocyanin
sw_5_scaffold_103_2
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1473..2420
DNA (948bp) protein (316aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI000372757B
Uncharacterized protein {ECO:0000313|EMBL:EMA46415.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DSM 1307
hypothetical protein
sw_5_scaffold_103_3
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2422..3222
DNA (801bp) protein (267aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00037172F1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI49130.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (st
sw_5_scaffold_103_4
unknown

Not on your lists

3226..3384
DNA (159bp) protein (53aa)

This feature has no annotations

sw_5_scaffold_103_5
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3381..3641
DNA (261bp) protein (87aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI000381A6BB
Iron-dependent repressor {ECO:0000313|EMBL:KKF39602.1}; TaxID=2248 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum.;"
troR; iron-dependent repressor
sw_5_scaffold_103_6
unknown

Not on your lists

3635..3781
DNA (147bp) protein (49aa)

This feature has no annotations

sw_5_scaffold_103_7
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3843..4010
DNA (168bp) protein (56aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI000369D514
Uncharacterized protein {ECO:0000313|EMBL:ELZ29667.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-
sw_5_scaffold_103_8
Natrinema versiforme, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4297..4842)
DNA (546bp) protein (182aa)
Ferritin n=1 Tax=Natrinema versiforme JCM 10478 RepID=L9XN37_9EURY
Ferritin {ECO:0000313|EMBL:ELY63155.1}; TaxID=1227496 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema versiforme JCM 10478.;"
ferritin
sw_5_scaffold_103_9
unknown

Not on your lists

comp(5007..5120)
DNA (114bp) protein (38aa)

This feature has no annotations

sw_5_scaffold_103_10
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5157..5696
DNA (540bp) protein (180aa)
Site-specific recombinase n=2 Tax=Natrialba RepID=M0A510_9EURY
Site-specific recombinase {ECO:0000313|EMBL:ELY75818.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 14663.;"
xerD; site-specific recombinase
sw_5_scaffold_103_11
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5823..6248)
DNA (426bp) protein (142aa)
Uncharacterized protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9YNW5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY75819.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 14663.;"
hypothetical protein
sw_5_scaffold_103_12
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6491..6718
DNA (228bp) protein (76aa)
Integrase family protein n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D8G2_HALXS
integrase protein
Integrase family protein {ECO:0000313|EMBL:AEH35585.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (strain DSM
sw_5_scaffold_103_13
unknown

Not on your lists

7343..7645
DNA (303bp) protein (101aa)

This feature has no annotations

sw_5_scaffold_103_14
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8402..12499
DNA (4098bp) protein (1366aa)
Conjugation protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0J3J7_HALVA
Conjugation protein {ECO:0000313|EMBL:EMA03506.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismortis ATCC 297
traG_traD; conjugation protein
sw_5_scaffold_103_15
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12539..14572
DNA (2034bp) protein (678aa)
Uncharacterized protein n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V780_HALMA
Uncharacterized protein {ECO:0000313|EMBL:AAV44656.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
hypothetical protein
sw_5_scaffold_103_16
Haloarcula vallismortis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

14994..15332
DNA (339bp) protein (113aa)
Uncharacterized protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0J5A7_HALVA
Uncharacterized protein {ECO:0000313|EMBL:EMA03503.1}; TaxID=662477 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula vallismortis ATCC
hypothetical protein
sw_5_scaffold_103_17
Haloarcula japonica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15325..15654
DNA (330bp) protein (110aa)
Uncharacterized protein n=1 Tax=Haloarcula japonica DSM 6131 RepID=M0L6F6_HALJP
Uncharacterized protein {ECO:0000313|EMBL:EMA27545.1}; TaxID=1227453 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula japonica DSM 613
hypothetical protein
sw_5_scaffold_103_18
Halobacterium sp. DL1, Halobacterium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15728..16426
DNA (699bp) protein (233aa)
Uncharacterized protein n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZGW2_9EURY
Transcriptional regulator, TrmB {ECO:0000313|EMBL:AHG05547.1}; TaxID=751944 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halobacterium.;" source="Halobacterium sp.
transcriptional regulator
sw_5_scaffold_103_19
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16436..16966
DNA (531bp) protein (177aa)
Uncharacterized protein n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JQ52_NATP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB33660.1}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pellirubrum (strain DSM 1
sw_5_scaffold_103_20
Natrialba taiwanensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17561..18460
DNA (900bp) protein (300aa)
Uncharacterized protein n=1 Tax=Natrialba taiwanensis DSM 12281 RepID=M0A5F3_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY93137.1}; TaxID=1230458 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba taiwanensis DSM 12281.;"
hypothetical protein
sw_5_scaffold_103_21
Natrialba taiwanensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18681..19403
DNA (723bp) protein (241aa)
HNH nuclease n=1 Tax=Natrialba taiwanensis DSM 12281 RepID=M0A726_9EURY
HNH nuclease {ECO:0000313|EMBL:ELY93138.1}; TaxID=1230458 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba taiwanensis DSM 12281.;"
hypothetical protein
sw_5_scaffold_103_22
unknown

Not on your lists

19372..19578
DNA (207bp) protein (69aa)

This feature has no annotations

sw_5_scaffold_103_23
Haloferax sp. BAB2207, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19788..20018
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Haloferax sp. BAB2207 RepID=L5NGB9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELK49562.1}; TaxID=1243180 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. BAB2207.;"
hypothetical protein
sw_5_scaffold_103_24
Natrialba aegyptia, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20037..23804)
DNA (3768bp) protein (1256aa)
Uncharacterized protein n=1 Tax=Natrialba aegyptia DSM 13077 RepID=M0ANT7_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELY99597.1}; TaxID=1227491 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba aegyptia DSM 13077.;"
sw_5_scaffold_103_25
unknown

Not on your lists

comp(24062..25291)
DNA (1230bp) protein (410aa)

This feature has no annotations

sw_5_scaffold_103_26
unknown

Not on your lists

comp(25269..25562)
DNA (294bp) protein (98aa)

This feature has no annotations

sw_5_scaffold_103_27

Not on your lists

25889..26176
DNA (288bp) protein (96aa)
Transcription initiation factor IIB (TFIIB) (Fragment) n=1 Tax=uncultured archaeon A07HR67 RepID=V4XKB7_9ARCH
Transcription initiation factor IIB (TFIIB) {ECO:0000313|EMBL:ESS02393.1}; Flags: Fragment;; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
Zinc finger TFIIB-type domain protein
sw_5_scaffold_103_28
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26210..26626
DNA (417bp) protein (139aa)
Transcription initiation factor IIB n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZEE5_9EURY
transcription initiation factor TFIIIB, Brf1 subunit/transcription initiation factor TFIIB
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natria
sw_5_scaffold_103_29
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

26975..27172
DNA (198bp) protein (66aa)
Uncharacterized protein n=2 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NNX8_HALBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ66409.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum borinquense
sw_5_scaffold_103_30

Not on your lists

27275..27601
DNA (327bp) protein (109aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HR67 RepID=V4Y2M1_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS05177.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
hypothetical protein
Displaying items 1-30 of 64 in total

View Taxonomy