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sw_5_scaffold_239

Search features with annotation key words

Displaying items 1-30 of 39 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_239_1

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3..428
DNA (426bp) protein (142aa)
Transcription factor TFIIB cyclin-related protein n=1 Tax=halophilic archaeon DL31 RepID=G2MGV4_9ARCH
transcription factor TFIIB cyclin-like protein
Transcription factor TFIIB cyclin-related protein {ECO:0000313|EMBL:AEN06044.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_5_scaffold_239_2
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(444..956)
DNA (513bp) protein (171aa)
Phosphopantetheine adenylyltransferase {ECO:0000313|EMBL:ELZ36187.1}; EC=2.7.7.3 {ECO:0000313|EMBL:ELZ36187.1};; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacac
Phosphopantetheine adenylyltransferase n=1 Tax=Halorubrum saccharovorum DSM 1137 RepID=M0DNA4_9EURY
cytidyltransferase-related enzyme
sw_5_scaffold_239_3
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1008..1598)
DNA (591bp) protein (197aa)
Transcriptional regulator, TrmB n=1 Tax=Halorubrum arcis JCM 13916 RepID=M0PPZ5_9EURY
Transcriptional regulator, TrmB {ECO:0000313|EMBL:EMA72021.1}; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum arcis JCM 13
transcriptional regulator TrmB
sw_5_scaffold_239_4
Streptomyces lividans, Streptomyces, Actinomycetales, Actinobacteridae, Actinobacteria, Bacteria

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comp(1605..2471)
DNA (867bp) protein (289aa)
S-adenosylmethionine-dependent methyltransferase n=1 Tax=Streptomyces lividans 1326 RepID=S1S5V2_STRLI
S-adenosylmethionine-dependent methyltransferase; TaxID=1200984 species="Bacteria; Actinobacteria; Actinobacteridae; Actinomycetales; Streptomycineae; Streptomycetaceae; Streptomyces.;" source="Streptomyces lividans 1326.;"
sw_5_scaffold_239_5
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(2762..3400)
DNA (639bp) protein (213aa)
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00351}; EC=2.1.1.- {ECO:0000256|HAMAP-Rule:MF_00351};; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialb
Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RT90_HALTV
fibrillarin
sw_5_scaffold_239_6
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(3393..4277)
DNA (885bp) protein (295aa)
Pre-mRNA processing ribonucleoprotein, binding domain protein n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9Z555_9EURY
Pre-mRNA processing ribonucleoprotein, binding domain protein {ECO:0000313|EMBL:ELY81494.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" sour
Pre-mRNA processing ribonucleoprotein, binding domain protein
sw_5_scaffold_239_7
Natrinema sp. J7-2, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5463..6104)
DNA (642bp) protein (214aa)
Uncharacterized protein n=1 Tax=Natrinema sp. (strain J7-2) PF7_NATSJ">RepID=I7BPF7_NATSJ
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AFO58537.1}; TaxID=406552 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema sp. (strain J7-2).;"
sw_5_scaffold_239_8
Natrinema sp. J7-2, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6141..6386)
DNA (246bp) protein (82aa)
CRISPR-associated endoribonuclease Cas2 {ECO:0000256|HAMAP-Rule:MF_01471}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01471};; TaxID=406552 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natr
CRISPR-associated endoribonuclease Cas2 n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZD06_9EURY
CRISPR-associated protein Cas2
sw_5_scaffold_239_9
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6389..7384)
DNA (996bp) protein (332aa)
CRISPR-associated endonuclease Cas1 {ECO:0000256|HAMAP-Rule:MF_01470}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_01470};; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrial
CRISPR-associated endonuclease Cas1 n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0C2N3_9EURY
CRISPR-associated protein Cas1
sw_5_scaffold_239_10
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(7384..7944)
DNA (561bp) protein (187aa)
CRISPR-associated protein Cas4 n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0C4S6_9EURY
CRISPR-associated protein Cas4 {ECO:0000313|EMBL:ELZ16929.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena thermotol
CRISPR-associated protein Cas4
sw_5_scaffold_239_11
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(7941..10520)
DNA (2580bp) protein (860aa)
Helicase n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0C140_9EURY
Helicase {ECO:0000313|EMBL:ELZ16930.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena thermotolerans DSM 11522.;"
helicase
sw_5_scaffold_239_12
Natrinema pallidum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(10520..11308)
DNA (789bp) protein (263aa)
CRISPR-associated protein Cas5 n=1 Tax=Natrinema pallidum DSM 3751 RepID=L9YK03_9EURY
CRISPR-associated protein Cas5 {ECO:0000313|EMBL:ELY73832.1}; TaxID=1227495 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pallidum DSM 3751
CRISPR-associated protein Cas5
sw_5_scaffold_239_13
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(11312..12364)
DNA (1053bp) protein (351aa)
CRISPR-associated protein, Csh2 family n=2 Tax=Natrinema RepID=I7CQ93_NATSJ
CRISPR-associated protein, Csh2 family
CRISPR-associated protein, Csh2 family {ECO:0000313|EMBL:ELY83891.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM
sw_5_scaffold_239_14
Natrinema sp. J7-2, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12357..14489)
DNA (2133bp) protein (711aa)
CRISPR-associated protein, Csh1 family n=1 Tax=Natrinema sp. (strain J7-2) RepID=I7BIP8_NATSJ
CRISPR-associated protein, Csh1 family {ECO:0000313|EMBL:AFO56172.1}; TaxID=406552 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema sp. (strai
CRISPR-associated protein, Csh1 family
sw_5_scaffold_239_15
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(14482..15288)
DNA (807bp) protein (269aa)
CRISPR-associated protein Cas6 n=1 Tax=Natrinema gari JCM 14663 RepID=L9ZBV7_9EURY
CRISPR-associated protein Cas6 {ECO:0000313|EMBL:ELY83889.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 14663.;"
CRISPR-associated protein Cas6
sw_5_scaffold_239_16

Not on your lists

16410..16823
DNA (414bp) protein (138aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HB70 RepID=V4ZTZ8_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS06285.1}; TaxID=1412872 species="Archaea; environmental samples.;" source="uncultured archaeon A07HB70.;"
hypothetical protein
sw_5_scaffold_239_17

Not on your lists

17208..18170
DNA (963bp) protein (321aa)
Uncharacterized protein n=1 Tax=halophilic archaeon DL31 RepID=G2MI35_9ARCH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEN07146.1}; Flags: Precursor;; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
sw_5_scaffold_239_18
halophilic archaeon J07HB67, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(18127..18558)
DNA (432bp) protein (144aa)
translation initiation factor 2 subunit beta n=1 Tax=Halomicrobium katesii RepID=UPI00036D6CE0
Translation initiation factor 2, beta subunit (EIF-2beta)/eIF-5 N-terminal domain protein {ECO:0000313|EMBL:ERH12060.1}; Flags: Fragment;; TaxID=1085029 species="Archaea; Euryarchaeota; Halobacteria;
translation initiation factor IF-2 subunit beta
sw_5_scaffold_239_19
Halonotius sp. J07HN4, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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18686..18928
DNA (243bp) protein (81aa)
Putative metal-binding protein n=1 Tax=Halonotius sp. J07HN4 RepID=U1QH90_9EURY
Putative metal-binding protein {ECO:0000313|EMBL:ERH06213.1}; TaxID=1070774 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J07HN4.;"
putative metal-binding protein
sw_5_scaffold_239_20
Natronococcus amylolyticus, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(18999..19496)
DNA (498bp) protein (166aa)
Uncharacterized protein n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SJL6_9EURY
UPF0212 protein C491_10399 {ECO:0000256|HAMAP-Rule:MF_01223}; TaxID=1227497 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronococcus.;" source="Natronococcus amylolyti
hypothetical protein
sw_5_scaffold_239_21
Halorubrum litoreum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(19598..20779)
DNA (1182bp) protein (394aa)
NADH dehydrogenase n=1 Tax=Halorubrum sp. T3 RepID=UPI00036DFA43
FAD-dependent pyridine nucleotide-disulfide oxidoreductase {ECO:0000313|EMBL:EMA62084.1}; TaxID=1227483 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" sour
FAD-dependent pyridine nucleotide-disulfide oxidoreductase
sw_5_scaffold_239_22
Halorubrum californiense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20884..21822)
DNA (939bp) protein (313aa)
udp1; uridine phosphorylase (EC:2.4.2.3)
Uridine phosphorylase n=1 Tax=Halorubrum californiensis DSM 19288 RepID=M0EM78_9EURY
Uridine phosphorylase {ECO:0000313|EMBL:ELZ48203.1}; TaxID=1227465 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum californiensis DSM 192
sw_5_scaffold_239_trna_1
unknown

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21887..21960
DNA (74bp)
transferRNA
sw_5_scaffold_239_23
unknown

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comp(22140..22973)
DNA (834bp) protein (278aa)

This feature has no annotations

sw_5_scaffold_239_24
Halorubrum californiense, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(23542..23862)
DNA (321bp) protein (107aa)
Uncharacterized protein n=1 Tax=Halorubrum californiensis DSM 19288 RepID=M0EE41_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ44709.1}; TaxID=1227465 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum californiensis DSM 1
hypothetical protein
sw_5_scaffold_239_25
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(23932..24399)
DNA (468bp) protein (156aa)
Uncharacterized protein n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NT93_HALBP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ68190.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum borinquense
sw_5_scaffold_239_26
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(24442..24633)
DNA (192bp) protein (64aa)
Uncharacterized protein n=2 Tax=Halobacteriaceae RepID=L0JK01_NATP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB31173.1}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pellirubrum (strain DSM 1
sw_5_scaffold_239_27
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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24765..25319
DNA (555bp) protein (185aa)
Thioredoxin reductase n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QSG2_9EURY
Thioredoxin reductase {ECO:0000313|EMBL:EFW92931.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophilus
thioredoxin reductase
sw_5_scaffold_239_28
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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25354..26262
DNA (909bp) protein (303aa)
hypothetical protein id=24645240 bin=halophilic_archaeon_J07HX64 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=halophilic_archaeon_J07HX64
Permeases of the drug/metabolite transporter (DMT) superfamily {ECO:0000313|EMBL:ERH09459.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeo
transporter of the drug/metabolite transporter (DMT) superfamily
sw_5_scaffold_239_29
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(26332..26811)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DI73_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ34422.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum J
cyclase/dehydrase
Displaying items 1-30 of 39 in total

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