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sw_5_scaffold_292

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_292_1
unknown

Not on your lists

1..408
-----------------
DNA (408bp)
protein (136aa)

This feature has no annotations

sw_5_scaffold_292_2
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(531..2105)
-----------------
DNA (1575bp)
protein (525aa)
DNA-directed RNA polymerase subunit B {ECO:0000313|EMBL:ELZ22437.1}; EC=2.7.7.6 {ECO:0000313|EMBL:ELZ22437.1};; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteri
rpoB''; DNA-directed RNA polymerase subunit B'' (EC:2.7.7.6)
RNA polymerase subunit B'' n=2 Tax=Haloarcula japonica RepID=B3A007_HALJP
sw_5_scaffold_292_3
Halorubrum terrestre, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2812..3366)
-----------------
DNA (555bp)
protein (185aa)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
Peptide methionine sulfoxide reductase MsrA n=2 Tax=Halorubrum RepID=M0D158_9EURY
methionine sulfoxide reductase A
sw_5_scaffold_292_4
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3461..3697
-----------------
DNA (237bp)
protein (79aa)
Uncharacterized protein n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LBQ6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA29410.1}; TaxID=1227454 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma nitratireducens JCM
hypothetical protein
sw_5_scaffold_292_5
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3834..4364
-----------------
DNA (531bp)
protein (177aa)
50S ribosomal protein L16 n=1 Tax=Halomicrobium katesii RepID=UPI0003813AA7
50S ribosomal protein L16
50S ribosomal protein L10e {ECO:0000256|HAMAP-Rule:MF_00448, ECO:0000256|SAAS:SAAS00015362}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobiu
sw_5_scaffold_292_6
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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4942..5859
-----------------
DNA (918bp)
protein (306aa)
RimK family alpha-L-glutamate ligase/30S ribosomal protein S6 modification protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0MX74_9EURY
RimK family alpha-L-glutamate ligase/30S ribosomal protein S6 modification protein {ECO:0000313|EMBL:EMA49923.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobact
RimK domain-containing protein ATP-grasp
sw_5_scaffold_292_7
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(5905..6309)
-----------------
DNA (405bp)
protein (135aa)
Heat shock protein Hsp20 n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D419_HALXS
heat shock protein Hsp20
Heat shock protein Hsp20 {ECO:0000313|EMBL:AEH36272.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (strain DSM
sw_5_scaffold_292_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6374..7399)
-----------------
DNA (1026bp)
protein (342aa)
Glyceraldehyde-3-phosphate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00559, ECO:0000256|RuleBase:RU003388}; Short=GAPDH {ECO:0000256|HAMAP-Rule:MF_00559};; EC=1.2.1.59 {ECO:0000256|HAMAP-Rule:MF_00559,
Glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFB7_9EURY
glyceraldehyde-3-phosphate dehydrogenase, type II
sw_5_scaffold_292_9
Haloterrigena limicola, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7646..8602
-----------------
DNA (957bp)
protein (319aa)
Uncharacterized protein n=1 Tax=Haloterrigena limicola JCM 13563 RepID=M0CRI0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ25831.1}; TaxID=1230457 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena limicola JCM 135
hypothetical protein
sw_5_scaffold_292_10
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8747..9415
-----------------
DNA (669bp)
protein (223aa)
Uncharacterized protein n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NPG7_HALUD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV12722.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahensis (stra
sw_5_scaffold_292_11
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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9412..10065
-----------------
DNA (654bp)
protein (218aa)
Protein-L-isoaspartate O-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00090}; EC=2.1.1.77 {ECO:0000256|HAMAP-Rule:MF_00090};; L-isoaspartyl protein carboxyl methyltransferase {ECO:0000256|HAMAP-Rule:M
protein-L-isoaspartate O-methyltransferase (EC:2.1.1.77)
Protein-L-isoaspartate O-methyltransferase n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0LFK5_9EURY
sw_5_scaffold_292_12
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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10121..10855
-----------------
DNA (735bp)
protein (245aa)
Protein-L-isoaspartate(D-aspartate) O-methyltransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CUB7_9EURY
Protein-L-isoaspartate(D-aspartate) O-methyltransferase {ECO:0000313|EMBL:ELZ26821.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" sou
protein-L-isoaspartate(D-aspartate) O-methyltransferase
sw_5_scaffold_292_13
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(10852..11316)
-----------------
DNA (465bp)
protein (155aa)
hypothetical protein id=24616464 bin=Halobonum_tyrrellensis species=Candidatus Halobonum tyrrellensis genus=Candidatus Halobonum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Halobonum_tyrrellensis
Uncharacterized protein {ECO:0000313|EMBL:ESP87608.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;" source="Candidatus Halobo
Ig domain-containing protein group 1 domain-containing protein
sw_5_scaffold_292_14
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11382..12455
-----------------
DNA (1074bp)
protein (358aa)
ATPase-like protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CYZ4_9EURY
ATPase-like protein {ECO:0000313|EMBL:ELZ27647.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.
putative ATPase
sw_5_scaffold_292_15
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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13659..14714
-----------------
DNA (1056bp)
protein (352aa)
Spermidine/putrescine ABC transporter ATPase component n=2 Tax=Halorubrum distributum RepID=M0EIW8_9EURY
Spermidine/putrescine ABC transporter ATPase component {ECO:0000313|EMBL:EMA71783.1}; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="
spermidine/putrescine ABC transporter ATPase component
sw_5_scaffold_292_16

Not on your lists

14767..15924
-----------------
DNA (1158bp)
protein (386aa)
Spermidine/putrescine-binding periplasmic protein n=1 Tax=uncultured archaeon A07HR67 RepID=V4XYT5_9ARCH
Spermidine/putrescine-binding periplasmic protein {ECO:0000313|EMBL:ESS03762.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
spermidine/putrescine ABC transporter substrate-binding protein
sw_5_scaffold_292_17

Not on your lists

15926..16888
-----------------
DNA (963bp)
protein (321aa)
ABC-type spermidine/putrescine transport system, permease component I n=1 Tax=uncultured archaeon A07HR67 RepID=V4XNW4_9ARCH
ABC-type spermidine/putrescine transport system, permease component I {ECO:0000313|EMBL:ESS03763.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
spermidine/putrescine ABC transporter permease
sw_5_scaffold_292_18

Not on your lists

16890..17798
-----------------
DNA (909bp)
protein (303aa)
ABC-type spermidine/putrescine transport system, permease component II n=1 Tax=uncultured archaeon A07HR67 RepID=V4X7T7_9ARCH
ABC-type spermidine/putrescine transport system, permease component II {ECO:0000313|EMBL:ESS03764.1}; TaxID=1412871 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR67.;"
spermidine/putrescine ABC transporter permease ii
sw_5_scaffold_292_19
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(17911..18645)
-----------------
DNA (735bp)
protein (245aa)
Uncharacterized protein n=1 Tax=Halosimplex carlsbadense 2-9-1 PF8_9EURY">RepID=M0CPF8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AKH97012.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchaeum su
hypothetical protein
sw_5_scaffold_292_20
Halorubrum distributum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(19176..19838)
-----------------
DNA (663bp)
protein (221aa)
Uncharacterized protein n=1 Tax=Haloarcula vallismortis ATCC 29715 RepID=M0JCC2_HALVA
Uncharacterized protein {ECO:0000313|EMBL:ELZ52147.1}; TaxID=1227468 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum distributum JCM 1011
hypothetical protein
sw_5_scaffold_292_21
Halorubrum saccharovorum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(20135..21778)
-----------------
DNA (1644bp)
protein (548aa)
Conserved hypothetical membrane protein (DUF1508) n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PLZ2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ40967.1}; TaxID=1227484 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum saccharovorum DSM 11
conserved hypothetical membrane protein (DUF1508)
sw_5_scaffold_292_22
Haloferax prahovense, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

22115..22333
-----------------
DNA (219bp)
protein (73aa)
UPF0391 membrane protein C457_15622 n=1 Tax=Haloferax prahovense DSM 18310 RepID=M0G0E0_9EURY
UPF0391 membrane protein C457_15622 {ECO:0000256|HAMAP-Rule:MF_01361}; TaxID=1227461 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax prahov
hypothetical protein
sw_5_scaffold_292_23
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22569..22769)
-----------------
DNA (201bp)
protein (67aa)
Uncharacterized protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PKV7_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERJ06128.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL4
sw_5_scaffold_292_24
Halonotius sp. J07HN6, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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22984..23628
-----------------
DNA (645bp)
protein (215aa)
Putative DNA binding protein n=1 Tax=Halonotius sp. J07HN6 RepID=U1NV63_9EURY
Putative DNA binding protein {ECO:0000313|EMBL:ERH01259.1}; TaxID=1238427 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J07HN6.;"
Bacterio-opsin activator HTH domain protein
sw_5_scaffold_292_25
unknown

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comp(23865..24149)
-----------------
DNA (285bp)
protein (95aa)

This feature has no annotations

sw_5_scaffold_292_26
Halogeometricum pallidum, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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24383..24970
-----------------
DNA (588bp)
protein (196aa)
Integrase family protein n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0CW55_9EURY
Integrase family protein {ECO:0000313|EMBL:ELZ26672.1}; TaxID=1227487 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halogeometricum.;" source="Halogeometricum pallidum
integrase family protein
sw_5_scaffold_292_27
Fischerella sp. JSC-11, Fischerella, Stigonematales, Cyanobacteria, Bacteria

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25545..25856
-----------------
DNA (312bp)
protein (104aa)
Putative uncharacterized protein n=1 Tax=Fischerella sp. JSC-11 RepID=G6FST0_9CYAN
Putative uncharacterized protein {ECO:0000313|EMBL:EHC14916.1}; TaxID=741277 species="Bacteria; Cyanobacteria; Stigonematales; Fischerella.;" source="Fischerella sp. JSC-11.;"
coenzyme PQQ biosynthesis protein PqqD
sw_5_scaffold_292_28
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

25846..26259
-----------------
DNA (414bp)
protein (138aa)
Uncharacterized protein n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KTN9_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:EMA23090.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM
sw_5_scaffold_292_29
Crinalium epipsammum, Crinalium, Oscillatoriales, Oscillatoriophycideae, Cyanobacteria, Bacteria

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26256..28151
-----------------
DNA (1896bp)
protein (632aa)
Asparagine synthetase n=1 Tax=Crinalium epipsammum PCC 9333 RepID=K9W5M8_9CYAN
asparagine synthase
Asparagine synthase {ECO:0000313|EMBL:AFZ15084.1}; TaxID=1173022 species="Bacteria; Cyanobacteria; Oscillatoriophycideae; Oscillatoriales; Crinalium.;" source="Crinalium epipsammum PCC 9333.;"
sw_5_scaffold_292_30
unknown

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28183..28293
-----------------
DNA (111bp)
protein (37aa)

This feature has no annotations

Displaying items 1-30 of 41 in total

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