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sw_5_scaffold_547

Search features with annotation key words

Displaying 29 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_547_1
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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2..244
DNA (243bp) protein (81aa)
Transcriptional regulator, ArsR family n=1 Tax=halophilic archaeon J07HX64 RepID=U1PD95_9EURY
Putative transcriptional regulator {ECO:0000313|EMBL:EMA37516.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi
putative transcriptional regulator
sw_5_scaffold_547_2
Haloferax sp. Arc-Hr, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

241..582
DNA (342bp) protein (114aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NB54_9EURY
Uncharacterized protein {ECO:0000313|EMBL:CQR53468.1}; TaxID=1476858 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. Arc-Hr.;"
hypothetical protein
sw_5_scaffold_547_3
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(589..1254)
DNA (666bp) protein (222aa)
Translation initiation factor 6 n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QN11_9EURY
Translation initiation factor 6 {ECO:0000256|HAMAP-Rule:MF_00032}; Short=aIF-6 {ECO:0000256|HAMAP-Rule:MF_00032};; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobact
translation initiation factor eIF-6
sw_5_scaffold_547_4
Halovivax ruber, Halovivax, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1256..1534)
DNA (279bp) protein (93aa)
50S ribosomal protein L31e n=1 Tax=Halovivax ruber (strain DSM 18193 / JCM 13892 / XH-70) RepID=L0I9S2_HALRX
ribosomal protein L31E
50S ribosomal protein L31e {ECO:0000256|HAMAP-Rule:MF_00410}; TaxID=797302 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halovivax.;" source="Halovivax ruber (strain DSM
sw_5_scaffold_547_5
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1534..1686)
DNA (153bp) protein (51aa)
50S ribosomal protein L39e n=2 Tax=Halobacteriaceae RepID=F8DBV1_HALXS
50S ribosomal protein L39
50S ribosomal protein L39e {ECO:0000256|HAMAP-Rule:MF_00629, ECO:0000313|EMBL:EMA34008.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" sourc
sw_5_scaffold_547_6
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1931..2692)
DNA (762bp) protein (254aa)
Metal transporter family GufA protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0NBI1_9EURY
Metal transporter family GufA protein {ECO:0000313|EMBL:EMA55332.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus sa
zinc/iron permease
sw_5_scaffold_547_7
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2787..3344)
DNA (558bp) protein (186aa)
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=1227457 species="A
2'-5' RNA ligase n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N8F0_9EURY
2'-5' RNA ligase
sw_5_scaffold_547_8
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3399..4265
DNA (867bp) protein (289aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MDP0_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA42799.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
TPR repeat-containing protein
sw_5_scaffold_547_9
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4271..4582
DNA (312bp) protein (104aa)
Uncharacterized protein n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0CLP9_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ22809.1}; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena salina JCM 13891
hypothetical protein
sw_5_scaffold_547_10
Haloferax sp. BAB2207, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4778..4909
DNA (132bp) protein (44aa)
Uncharacterized protein {ECO:0000313|EMBL:ELK55727.1}; TaxID=1243180 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. BAB2207.;"
sw_5_scaffold_547_11
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4910..6880)
DNA (1971bp) protein (657aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MKU8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA46296.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_5_scaffold_547_12
unknown

Not on your lists

7018..7245
DNA (228bp) protein (76aa)

This feature has no annotations

sw_5_scaffold_547_13
Haloferax mucosum, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7842..8012
DNA (171bp) protein (57aa)
Uncharacterized protein n=2 Tax=Haloferax mediterranei (strain ATCC 33500 / DSM 1411 / JCM 8866 / NBRC 14739 / NCIMB 2177 / R-4) RepID=M0J3G0_HALMT
Uncharacterized protein {ECO:0000313|EMBL:ELZ95193.1}; TaxID=662479 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax mucosum ATCC BAA-1512.;
hypothetical protein
sw_5_scaffold_547_14
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8180..8410
DNA (231bp) protein (77aa)
Uncharacterized protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M8C5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AKH98556.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchaeum su
hypothetical protein
sw_5_scaffold_547_15
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8504..8965)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N641_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA53402.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
hypothetical protein
sw_5_scaffold_547_16
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9170..10303)
DNA (1134bp) protein (378aa)
NMD3 family protein n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M5H4_9EURY
NMD3 family protein {ECO:0000313|EMBL:EMA40653.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A6.;
nonsense mediated mRNA decay-like protein
sw_5_scaffold_547_17
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10349..11236)
DNA (888bp) protein (296aa)
UDP-glucose 4-epimerase n=1 Tax=Halogranum salarium B-1 RepID=J3A391_9EURY
UDP-glucose 4-epimerase {ECO:0000313|EMBL:EJN59833.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
UDP-glucose 4-epimerase
sw_5_scaffold_547_18
Haloarcula californiae, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11354..12229
DNA (876bp) protein (292aa)
Protease HtpX homolog {ECO:0000256|HAMAP-Rule:MF_00188}; EC=3.4.24.- {ECO:0000256|HAMAP-Rule:MF_00188};; TaxID=662475 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae;
htpX1; heat shock protein HtpX (EC:3.4.24.-)
Protease HtpX homolog n=1 Tax=Haloarcula californiae ATCC 33799 RepID=M0L0Q6_9EURY
sw_5_scaffold_547_19
unknown

Not on your lists

comp(12233..12688)
DNA (456bp) protein (152aa)

This feature has no annotations

sw_5_scaffold_547_20
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12944..13549
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N9H6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA53764.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_5_scaffold_547_21
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13752..14786
DNA (1035bp) protein (345aa)
DNA repair and recombination protein RadA n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N861_9EURY
DNA repair and recombination protein RadA {ECO:0000256|HAMAP-Rule:MF_00348}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Haloc
radA; DNA repair and recombination protein RadA
sw_5_scaffold_547_22
unknown

Not on your lists

comp(14917..15045)
DNA (129bp) protein (43aa)

This feature has no annotations

sw_5_scaffold_547_23
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15258..16634
DNA (1377bp) protein (459aa)
Aldehyde dehydrogenase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M5Y2_9EURY
Aldehyde dehydrogenase {ECO:0000313|EMBL:EMA39790.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A
aldehyde dehydrogenase
sw_5_scaffold_547_24
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16769..17605)
DNA (837bp) protein (279aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MFF5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA44083.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_5_scaffold_547_25
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17871..18560
DNA (690bp) protein (230aa)
IS1341-type transposase n=1 Tax=Haloquadratum walsbyi (strain DSM 16790 / HBSQ001) RepID=Q18EG4_HALWD
IS1341-type transposase
IS1341-type transposase {ECO:0000313|EMBL:CAJ53663.1}; TaxID=362976 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi (strain
sw_5_scaffold_547_26
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18573..19025
DNA (453bp) protein (151aa)
IS1341-type transposase n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MRI9_9EURY
IS1341-type transposase {ECO:0000313|EMBL:EMA47055.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
transposase, IS605 OrfB family
sw_5_scaffold_547_27
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(19102..20454)
DNA (1353bp) protein (451aa)
Propionate catabolism protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MRV8_HALMO
Propionate catabolism protein {ECO:0000313|EMBL:EMA48361.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus morrhuae DS
propionate catabolism protein
sw_5_scaffold_547_28
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20578..22167
DNA (1590bp) protein (530aa)
Acetolactate synthase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0MA31_9EURY
Acetolactate synthase {ECO:0000313|EMBL:EMA41479.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A6
acetolactate synthase
sw_5_scaffold_547_29
unknown

Not on your lists

22289..22423
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 29 items

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