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sw_5_scaffold_1149

Search features with annotation key words

Displaying 25 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_1149_1
Bos mutus, Bos, Mammalia, Chordata, Metazoa

Not on your lists

comp(2..682)
DNA (681bp) protein (227aa)
Serine/arginine repetitive matrix protein 2 {ECO:0000313|EMBL:ELR62938.1}; TaxID=72004 species="Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Ce
sw_5_scaffold_1149_2
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(633..935)
DNA (303bp) protein (101aa)
Cupin n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D0J6_9EURY
Cupin {ECO:0000313|EMBL:ELZ27669.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
cupin
sw_5_scaffold_1149_3
unknown

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comp(1020..1283)
DNA (264bp) protein (88aa)

This feature has no annotations

sw_5_scaffold_1149_4
Haloferax gibbonsii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1412..1681
DNA (270bp) protein (90aa)
gpdC1; glycerol-3-phosphate dehydrogenase (EC:1.1.5.3)
sn-glycerol-3-phosphate dehydrogenase subunit C n=1 Tax=Haloferax sulfurifontis ATCC BAA-897 RepID=M0IQG7_9EURY
sn-glycerol-3-phosphate dehydrogenase subunit C {ECO:0000313|EMBL:ELZ77812.1}; TaxID=1227459 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Halofera
sw_5_scaffold_1149_5
Halostagnicola sp. A56, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1653..2222
DNA (570bp) protein (190aa)
Glycerol-3-phosphate dehydrogenase, anaerobic, C subunit n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NYT7_HALMD
Glycerol-3-phosphate dehydrogenase {ECO:0000313|EMBL:KDE57996.1}; TaxID=1495067 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola sp.
glycerol-3-phosphate dehydrogenase
sw_5_scaffold_1149_6
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2188..2472
DNA (285bp) protein (95aa)
sn-glycerol-3-phosphate dehydrogenase subunit C n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QYY6_9EURY
sn-glycerol-3-phosphate dehydrogenase subunit C {ECO:0000313|EMBL:EFW90402.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Ha
glpC; sn-glycerol-3-phosphate dehydrogenase subunit C
sw_5_scaffold_1149_7
GWC2_Planctomycetes_45_44_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(2834..4051)
DNA (1218bp) protein (406aa)
Putative uncharacterized protein id=4840490 bin=GWC2_Planctomycetes_45_44 species=Holdemania filiformis genus=Holdemania taxon_order=Erysipelotrichales taxon_class=Erysipelotrichia phylum=Firmicutes tax=GWC2_Planctomycetes_45_44 organism_group=Planctomycetes organism_desc=Novel; good
putative alpha-L-fucosidase Tax=GWC2_Planctomycetes_45_44_curated
putative alpha-L-fucosidase
sw_5_scaffold_1149_8
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4096..4518)
DNA (423bp) protein (141aa)
mgsA; methylglyoxal synthase (EC:4.2.3.3)
Methylglyoxal synthase {ECO:0000313|EMBL:ACV46726.1}; EC=4.2.3.3 {ECO:0000313|EMBL:ACV46726.1};; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicr
methylglyoxal synthase n=1 Tax=Halomicrobium katesii RepID=UPI000365CFE7
sw_5_scaffold_1149_9
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5162..5911
DNA (750bp) protein (250aa)
G6PDH family F420-dependent oxidoreductase n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4WA48_9EURY
G6PDH family F420-dependent oxidoreductase
G6PDH family F420-dependent oxidoreductase {ECO:0000313|EMBL:AGN02329.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchae
sw_5_scaffold_1149_10
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

5923..6102
DNA (180bp) protein (60aa)
G6PDH family F420-dependent oxidoreductase {ECO:0000313|EMBL:AGN02329.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchae
sw_5_scaffold_1149_11
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6283..6621
DNA (339bp) protein (113aa)
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QV90_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW91608.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
hypothetical protein
sw_5_scaffold_1149_12
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(6653..7843)
DNA (1191bp) protein (397aa)
Beta-lactamase domain protein {ECO:0000313|EMBL:CCQ33902.1}; mRNA 3'-end processing factor protein {ECO:0000313|EMBL:ERJ06712.1}; EC=3.1.27.- {ECO:0000313|EMBL:ERJ06712.1};; TaxID=1033806 species="Arc
Beta-lactamase domain protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PGT9_9EURY
beta-lactamase domain protein
sw_5_scaffold_1149_13
Halostagnicola sp. A56, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

7973..8902
DNA (930bp) protein (310aa)
5-dehydro-4-deoxyglucarate dehydratase (EC:4.2.1.41)
Dihydrodipicolinate synthetase n=1 Tax=haloarchaeon 3A1_DGR RepID=T0SHV7_9EURY
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:KDE57600.1}; TaxID=1495067 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halostagnicola.;" source="Halostagnicola sp. A56
sw_5_scaffold_1149_14
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

9527..10231
DNA (705bp) protein (235aa)
Mandelate racemase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M9E1_9EURY
Mandelate racemase {ECO:0000313|EMBL:EMA41254.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hamelinensis 100A6.;"
mandelate racemase
sw_5_scaffold_1149_15
Frankia sp. EAN1pec, Frankia, Frankiales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

10213..10680
DNA (468bp) protein (156aa)
ketosteroid isomerase n=1 Tax=Nevskia ramosa RepID=UPI0003B33431
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW12539.1}; TaxID=298653 species="Bacteria; Actinobacteria; Frankiales; Frankiaceae; Frankia.;" source="Frankia sp. (strain EAN1pec).;"
sw_5_scaffold_1149_16
Halorubrum lipolyticum, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11696..13171
DNA (1476bp) protein (492aa)
alpha-galactosidase (EC:3.2.1.22)
Alpha-galactosidase n=1 Tax=Halorubrum lipolyticum DSM 21995 RepID=M0NKT7_9EURY
Alpha-galactosidase {ECO:0000313|EMBL:EMA58193.1}; TaxID=1227482 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum lipolyticum DSM 21995.;"
sw_5_scaffold_1149_17
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

13657..15171
DNA (1515bp) protein (505aa)
alpha-L-arabinofuranosidase, family GH51 (EC:3.2.1.55) rbh
Alpha-L-arabinofuranosidase, family GH51 {ECO:0000313|EMBL:CCQ35008.1}; EC=3.2.1.55 {ECO:0000313|EMBL:CCQ35008.1};; Alpha-N-arabinofuranosidase 2 protein {ECO:0000313|EMBL:ERJ05599.1}; EC=3.2.1.55 {EC
Alpha-L-arabinofuranosidase, family GH51 n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PHL8_9EURY
sw_5_scaffold_1149_18
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

15241..16197
DNA (957bp) protein (319aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3A1N6_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN59218.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
phosphotransferase
sw_5_scaffold_1149_19
Ophiostoma piceae, Ophiostoma, Ophiostomatales, Sordariomycetidae, Ascomycota, Fungi

Not on your lists

17331..18713
DNA (1383bp) protein (461aa)
Uncharacterized protein n=1 Tax=Ophiostoma piceae (strain UAMH 11346) RepID=S3C0A8_OPHP1
Uncharacterized protein {ECO:0000313|EMBL:EPE05131.1}; TaxID=1262450 species="Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Sordariomycetes; Sordariomycetidae; Ophiostomatales; Ophiostomatace
sw_5_scaffold_1149_20
Halococcus hamelinensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19457..19987
DNA (531bp) protein (177aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Halococcus hamelinensis 100A6 RepID=M0M2Q4_9EURY
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:EMA38680.1}; TaxID=1132509 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus hame
epimerase
sw_5_scaffold_1149_21
unknown

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20040..20474
DNA (435bp) protein (145aa)

This feature has no annotations

sw_5_scaffold_1149_22
unknown

Not on your lists

20531..21313
DNA (783bp) protein (261aa)

This feature has no annotations

sw_5_scaffold_1149_23

Not on your lists

comp(21454..22551)
DNA (1098bp) protein (366aa)
Malate/L-lactate dehydrogenase n=1 Tax=uncultured archaeon A07HR60 RepID=V4YLY5_9ARCH
Malate/L-lactate dehydrogenase {ECO:0000313|EMBL:ESS12602.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
malate/lactate dehydrogenase
sw_5_scaffold_1149_24
unknown

Not on your lists

22576..22797
DNA (222bp) protein (74aa)

This feature has no annotations

sw_5_scaffold_1149_25
Nostoc sp. PCC 7524, Nostoc, Nostocales, Cyanobacteria, Bacteria

Not on your lists

22842..25724
DNA (2883bp) protein (961aa)
Parallel beta-helix repeat (Two copies) n=1 Tax=Nostoc sp. (strain ATCC 29411 / PCC 7524) RepID=K9QT33_NOSS7
parallel beta-helix repeat (two copies)
Parallel beta-helix repeat (Two copies) {ECO:0000313|EMBL:AFY47957.1}; Flags: Precursor;; TaxID=28072 species="Bacteria; Cyanobacteria; Nostocales; Nostocaceae; Nostoc.;" source="Nostoc sp. (strain AT
Displaying 25 items

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