ggKbase home page

sw_5_scaffold_308

Search features with annotation key words

Displaying 29 items
Loading...
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_308_1
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

1..261
DNA (261bp) protein (87aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MW75_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA48695.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
ISH4-type transposase homolog
sw_5_scaffold_308_2
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

303..725
DNA (423bp) protein (141aa)
Transposase family protein n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=G4G341_NATGS
transposase family protein
Transposase family protein {ECO:0000313|EMBL:AFZ71885.1}; TaxID=797304 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronobacterium.;" source="Natronobacterium gregoryi
sw_5_scaffold_308_3
unknown

Not on your lists

783..911
DNA (129bp) protein (43aa)

This feature has no annotations

sw_5_scaffold_308_4
Haloterrigena salina, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(912..1199)
DNA (288bp) protein (96aa)
Uncharacterized protein n=1 Tax=Haloterrigena salina JCM 13891 RepID=M0CBR2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ19344.1}; TaxID=1227488 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena salina JCM 13891
hypothetical protein
sw_5_scaffold_308_5
Haloarcula amylolytica, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1526..1957)
DNA (432bp) protein (144aa)
Transposase ISHwa4 n=1 Tax=Haloarcula amylolytica JCM 13557 RepID=M0KDU1_9EURY
Transposase ISHwa4 {ECO:0000313|EMBL:EMA19386.1}; TaxID=1227452 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula amylolytica JCM 13557
transposase (IS4-like)
sw_5_scaffold_308_6
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1967..2719)
DNA (753bp) protein (251aa)
Transposase ISHwa4 n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LSU6_9EURY
transposase family protein
Transposase ISHwa4 {ECO:0000313|EMBL:EMA35185.1}; TaxID=358396 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halobiforma.;" source="Halobiforma lacisalsi AJ5.;"
sw_5_scaffold_308_7
Halococcus morrhuae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

2832..3107
DNA (276bp) protein (92aa)
Transcriptional regulator, arsr family protein n=1 Tax=Halococcus morrhuae DSM 1307 RepID=M0MCK9_HALMO
Transcriptional regulator, arsr family protein {ECO:0000313|EMBL:EMA42135.1}; TaxID=931277 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Haloc
ArsR family transcriptional regulator
sw_5_scaffold_308_8
unknown

Not on your lists

3434..3847
DNA (414bp) protein (138aa)

This feature has no annotations

sw_5_scaffold_308_9
Haloterrigena thermotolerans, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

4084..4458
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Haloterrigena thermotolerans DSM 11522 RepID=M0BUQ4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ14118.1}; TaxID=1227489 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena thermotolerans D
hypothetical protein
sw_5_scaffold_308_10
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(4552..5256)
DNA (705bp) protein (235aa)
DnaJ N-terminal domain-containing protein n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J6U8_HALJB
DnaJ N-terminal domain-containing protein
DnaJ N-terminal domain-containing protein {ECO:0000313|EMBL:ADJ15901.1}; TaxID=795797 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halalkalicoccus.;" source="Halal
sw_5_scaffold_308_11
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(5386..6318)
DNA (933bp) protein (311aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XPV8_NATM8
NAD-dependent epimerase/dehydratase
GalE family epimerase/dehydratase {ECO:0000313|EMBL:CCQ36131.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moo
sw_5_scaffold_308_12
unknown

Not on your lists

6343..6930
DNA (588bp) protein (196aa)

This feature has no annotations

sw_5_scaffold_308_13
Halostagnicola larsenii, Halostagnicola, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

6955..7494
DNA (540bp) protein (180aa)
tRNA (cytidine(56)-2'-O)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_00077}; EC=2.1.1.206 {ECO:0000256|HAMAP-Rule:MF_00077};; tRNA ribose 2'-O-methyltransferase aTrm56 {ECO:0000256|HAMAP-Rule:MF_0007
tRNA (cytidine(56)-2'-O)-methyltransferase n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NQL3_HALUD
tRNA methyltransferase
sw_5_scaffold_308_14
Halogranum salarium, Halogranum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7529..8125)
DNA (597bp) protein (199aa)
Uncharacterized protein n=1 Tax=Halogranum salarium B-1 RepID=J3JHD5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EJN60891.1}; TaxID=1210908 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae.;" source="Halogranum salarium B-1.;"
phosphinothricin N-acetyltransferase
sw_5_scaffold_308_15
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8243..9004)
DNA (762bp) protein (254aa)
hypothetical protein n=1 Tax=Halomicrobium katesii RepID=UPI00036E0F96
Uncharacterized protein {ECO:0000313|EMBL:EMA46727.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_5_scaffold_308_16
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9506..10483)
DNA (978bp) protein (326aa)
Putative ribose 1,5-bisphosphate isomerase {ECO:0000256|HAMAP-Rule:MF_00304}; EC=5.3.1.29 {ECO:0000256|HAMAP-Rule:MF_00304};; Ribulose 1,5-bisphosphate synthase {ECO:0000256|HAMAP-Rule:MF_00304}; TaxI
Putative ribose 1,5-bisphosphate isomerase n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JMY6_NATP1
thiazole biosynthesis enzyme
sw_5_scaffold_308_17
Halobiforma nitratireducens, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

10732..11253
DNA (522bp) protein (174aa)
Transcription factor E n=1 Tax=Halobiforma nitratireducens JCM 10879 RepID=M0MDU9_9EURY
Transcription factor E {ECO:0000256|HAMAP-Rule:MF_01909, ECO:0000256|SAAS:SAAS00008967}; Short=TFE {ECO:0000256|HAMAP-Rule:MF_01909};; TFIIE subunit alpha homolog {ECO:0000256|HAMAP-Rule:MF_01909}; Tr
transcription initiation factor IIE, alpha subunit
sw_5_scaffold_308_18
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11261..11926
DNA (666bp) protein (222aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0N4V8_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA52149.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_5_scaffold_308_19
Haladaptatus paucihalophilus, Haladaptatus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12108..12833
DNA (726bp) protein (242aa)
Putative uncharacterized protein n=1 Tax=Haladaptatus paucihalophilus DX253 RepID=E7QYK2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EFW90268.1}; TaxID=797209 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haladaptatus.;" source="Haladaptatus paucihalophil
hypothetical protein
sw_5_scaffold_308_20
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12953..15613)
DNA (2661bp) protein (887aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MIE2_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA45477.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
sw_5_scaffold_308_21
Haloquadratum walsbyi, Haloquadratum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

16386..17381
DNA (996bp) protein (332aa)
glycosyl tranferase; dolichyl-phosphate beta-glucosyltransferase (EC:2.4.1.117) id=24627696 bin=Haloquadratum_Walsbyi_J07HWQ1 species=Haloquadratum walsbyi genus=Haloquadratum taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=Haloquadratum_Walsbyi_J07HWQ1
glycosyl tranferase; dolichyl-phosphate beta-glucosyltransferase (EC:2.4.1.117)
Uncharacterized protein {ECO:0000313|EMBL:ERG90446.1}; TaxID=1238424 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloquadratum.;" source="Haloquadratum walsbyi J07HQW
sw_5_scaffold_308_trna_1
unknown

Not on your lists

17454..17528
DNA (75bp)
transferRNA
sw_5_scaffold_308_22

Not on your lists

comp(17776..17973)
DNA (198bp) protein (66aa)
Uncharacterized protein n=1 Tax=uncultured archaeon A07HR60 RepID=V4XQI6_9ARCH
Uncharacterized protein {ECO:0000313|EMBL:ESS10749.1}; TaxID=1412874 species="Archaea; environmental samples.;" source="uncultured archaeon A07HR60.;"
sw_5_scaffold_308_23
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(17974..18453)
DNA (480bp) protein (160aa)
Uncharacterized protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RY43_HALTV
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADB61789.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source="Haloterrigena turkmenica (strai
sw_5_scaffold_308_24
Halomicrobium mukohataei, Halomicrobium, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(18462..19010)
DNA (549bp) protein (183aa)
Uncharacterized protein n=1 Tax=Halomicrobium mukohataei (strain ATCC 700874 / DSM 12286 / JCM 9738 / NCIMB 13541) RepID=C7NWK8_HALMD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV48218.1}; TaxID=485914 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halomicrobium.;" source="Halomicrobium mukohataei
sw_5_scaffold_308_25
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19258..21255
DNA (1998bp) protein (666aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MXC4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA50251.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_5_scaffold_308_26
Halococcus thailandensis, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

21252..23117
DNA (1866bp) protein (622aa)
Uncharacterized protein n=1 Tax=Halococcus thailandensis JCM 13552 RepID=M0MXC4_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA50251.1}; TaxID=1227457 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus thailandensis JC
hypothetical protein
sw_5_scaffold_308_27
Natrialba taiwanensis, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23507..24052
DNA (546bp) protein (182aa)
Phosphoribosyltransferase n=1 Tax=Natrialba taiwanensis DSM 12281 RepID=M0AD50_9EURY
Phosphoribosyltransferase {ECO:0000313|EMBL:ELY95792.1}; TaxID=1230458 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrialba.;" source="Natrialba taiwanensis DSM 12281.
putative phosphoribosyltransferase
sw_5_scaffold_308_28
Natrialba magadii, Natrialba, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(24146..25411)
DNA (1266bp) protein (422aa)
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase n=1 Tax=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) RepID=D3SVX4_NATMM
acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase
Acetylornithine deacetylase or succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ADD03693.1}; Acetylornithine deacetylase/succinyl-diaminopimelate desuccinylase {ECO:0000313|EMBL:ELY34457.1}; T
Displaying 29 items

View Taxonomy