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sw_5_scaffold_2198

Search features with annotation key words

Displaying 20 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_2198_1
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1..225
DNA (225bp) protein (75aa)
DUF192 family protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XZ66_NATM8
DUF192 family protein
DUF192 family protein {ECO:0000313|EMBL:CCQ35444.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis (st
sw_5_scaffold_2198_2
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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407..1999
DNA (1593bp) protein (531aa)
leuA_2; (R)-citramalate synthase (EC:2.3.3.- 2.3.3.13)
2-isopropylmalate synthase / (R)-citramalate synthase {ECO:0000313|EMBL:CAI48403.1}; EC=2.3.1.182 {ECO:0000313|EMBL:CAI48403.1};; EC=2.3.3.13 {ECO:0000313|EMBL:CAI48403.1};; TaxID=348780 species="Arch
2-isopropylmalate synthase / (R)-citramalate synthase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITY0_NATPD
sw_5_scaffold_2198_3
Haloferax larsenii, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(2018..3043)
DNA (1026bp) protein (342aa)
Modification methylase {ECO:0000256|RuleBase:RU362026}; EC=2.1.1.113 {ECO:0000256|RuleBase:RU362026};; TaxID=1227460 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halof
zim; CTAG modification methylase (EC:2.1.1.113)
CTAG modification methylase / site-specific DNA-methyltransferase (Cytosine-N4-specific) n=1 Tax=Haloferax larsenii JCM 13917 RepID=M0GQ45_9EURY
sw_5_scaffold_2198_4
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3134..4798
DNA (1665bp) protein (555aa)
Glycosyltransferase AglD {ECO:0000313|EMBL:CAI49213.1}; EC=2.4.-.- {ECO:0000313|EMBL:CAI49213.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natron
Glycosyltransferase AglD n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IRN0_NATPD
glycosyltransferase
sw_5_scaffold_2198_5
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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5294..5887
DNA (594bp) protein (198aa)
Transcription initiation factor IIB n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IRM9_NATPD
tfbA_3; transcription initiation factor TFB 3
Transcription initiation factor IIB {ECO:0000256|HAMAP-Rule:MF_00383}; Short=TFIIB {ECO:0000256|HAMAP-Rule:MF_00383};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halo
sw_5_scaffold_2198_6
Halorubrum lacusprofundi, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(5811..6083)
DNA (273bp) protein (91aa)
Rpo operon protein n=1 Tax=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) RepID=B9LTN4_HALLT
rpo operon protein
Rpo operon protein {ECO:0000313|EMBL:ACM56168.1}; TaxID=416348 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum lacusprofundi (strain ATCC
sw_5_scaffold_2198_7
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6097..6231)
DNA (135bp) protein (45aa)
rpoP; DNA-directed RNA polymerase subunit P (EC:2.7.7.6)
DNA-directed RNA polymerase subunit P {ECO:0000256|HAMAP-Rule:MF_00615}; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00615};; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Hal
DNA-directed RNA polymerase subunit P n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XPW7_NATM8
sw_5_scaffold_2198_8
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6235..6498)
DNA (264bp) protein (88aa)
50S ribosomal protein L37Ae n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DBN1_HALXS
ribosomal L37ae protein
50S ribosomal protein L37Ae {ECO:0000256|HAMAP-Rule:MF_00327}; Ribosomal protein L43e {ECO:0000256|HAMAP-Rule:MF_00327}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natri
sw_5_scaffold_2198_9
Natronorubrum tibetense, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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6591..6854
DNA (264bp) protein (88aa)
Uncharacterized protein n=1 Tax=Natronorubrum tibetense GA33 RepID=L9W075_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELY42899.1}; TaxID=1114856 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;" source="Natronorubrum tibetense GA33.;
hypothetical protein
sw_5_scaffold_2198_10
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(6817..7539)
DNA (723bp) protein (241aa)
Uncharacterized protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XKK8_NATM8
hypothetical protein
DUF2103 family protein {ECO:0000313|EMBL:CCQ36078.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis (s
sw_5_scaffold_2198_11
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(7577..8296)
DNA (720bp) protein (240aa)
Type 11 methyltransferase n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0D5U2_9EURY
Type 11 methyltransferase {ECO:0000313|EMBL:ELZ29499.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense
hypothetical protein
sw_5_scaffold_2198_12
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(8563..9810)
DNA (1248bp) protein (416aa)
truD; tRNA pseudouridine synthase D (EC:5.4.99.12)
Probable tRNA pseudouridine synthase D {ECO:0000255|HAMAP-Rule:MF_01082}; EC=5.4.99.27 {ECO:0000255|HAMAP-Rule:MF_01082};; tRNA pseudouridine(13) synthase {ECO:0000255|HAMAP-Rule:MF_01082}; tRNA pseud
Probable tRNA pseudouridine synthase D n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=TRUD_NATPD
sw_5_scaffold_2198_13
Natrinema gari, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9945..10400)
DNA (456bp) protein (152aa)
Uncharacterized protein n=1 Tax=Natrinema altunense JCM 12890 RepID=L9ZFM2_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ELY79580.1}; TaxID=1230459 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema gari JCM 14663.;"
sw_5_scaffold_2198_14
Halonotius sp. J07HN6, Halonotius, Haloferacales, Halobacteria, Euryarchaeota, Archaea

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comp(10400..10690)
DNA (291bp) protein (97aa)
Uncharacterized protein n=1 Tax=Halonotius sp. J07HN6 RepID=U1NZK5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ERH02979.1}; TaxID=1238427 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halonotius.;" source="Halonotius sp. J07HN6.;"
hypothetical protein
sw_5_scaffold_2198_15
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10728..11138)
DNA (411bp) protein (137aa)
peptidyl-tRNA hydrolase (EC:3.1.1.29)
Peptidyl-tRNA hydrolase {ECO:0000313|EMBL:CAI50703.2}; EC=3.1.1.29 {ECO:0000313|EMBL:CAI50703.2};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natron
Peptidyl-tRNA hydrolase n=2 Tax=Natronomonas pharaonis RepID=Q3IMF5_NATPD
sw_5_scaffold_2198_16
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11169..11762
DNA (594bp) protein (198aa)
dcd; dCTP deaminase (dUMP-forming) (EC:3.5.4.30)
Probable deoxycytidine triphosphate deaminase {ECO:0000256|HAMAP-Rule:MF_00146}; Short=dCTP deaminase {ECO:0000256|HAMAP-Rule:MF_00146};; EC=3.5.4.13 {ECO:0000256|HAMAP-Rule:MF_00146};; TaxID=268739 s
Probable deoxycytidine triphosphate deaminase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XU49_NATM8
sw_5_scaffold_2198_17
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

11759..12655
DNA (897bp) protein (299aa)
HTH domain protein / thiamine-phosphate synthase {ECO:0000313|EMBL:CAI50675.1}; EC=2.5.1.3 {ECO:0000313|EMBL:CAI50675.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales;
HTH domain protein / thiamine-phosphate synthase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMI3_NATPD
hypothetical protein
sw_5_scaffold_2198_18
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12655..13311
DNA (657bp) protein (219aa)
S-adenosylmethionine-dependent methyltransferase 3 (EC:2.1.1.-)
Probable S-adenosylmethionine-dependent methyltransferase {ECO:0000313|EMBL:CAI50676.1}; EC=2.1.1.- {ECO:0000313|EMBL:CAI50676.1};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobact
Probable S-adenosylmethionine-dependent methyltransferase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IMI2_NATPD
sw_5_scaffold_2198_19
unknown

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13372..13737
DNA (366bp) protein (122aa)

This feature has no annotations

sw_5_scaffold_2198_20
Halococcus saccharolyticus, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(13747..14574)
DNA (828bp) protein (276aa)
Uncharacterized protein n=1 Tax=Halococcus saccharolyticus DSM 5350 RepID=M0MH50_9EURY
Uncharacterized protein {ECO:0000313|EMBL:EMA44683.1}; TaxID=1227455 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus saccharolyticus
hypothetical protein
Displaying 20 items

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