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sw_5_scaffold_3250

Search features with annotation key words

Displaying 17 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_3250_1
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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1..987
DNA (987bp) protein (329aa)
trpA; tryptophan synthase subunit alpha (EC:4.2.1.20)
Tryptophan synthase alpha chain {ECO:0000255|HAMAP-Rule:MF_00131}; EC=4.2.1.20 {ECO:0000255|HAMAP-Rule:MF_00131};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobact
Tryptophan synthase alpha chain n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=TRPA_NATPD
sw_5_scaffold_3250_2
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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984..1805
DNA (822bp) protein (274aa)
fba_2; fructose-bisphosphate aldolase (EC:4.1.2.13)
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IQC5_NATPD
2-amino-3,7-dideoxy-D-threo-hept-6-ulosonate synthase {ECO:0000256|HAMAP-Rule:MF_00960}; Short=ADH synthase {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADHS {ECO:0000256|HAMAP-Rule:MF_00960};; Short=ADT
sw_5_scaffold_3250_3
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(1903..2310)
DNA (408bp) protein (136aa)
JAMM domain protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IUQ8_NATPD
hypothetical protein
Metalloprotease JAMM1, desampylating {ECO:0000313|EMBL:CAI48122.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas
sw_5_scaffold_3250_4
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2312..2554)
DNA (243bp) protein (81aa)
ABC-type transport system periplasmic substrate-binding protein (Probable substrate iron/cobalamin) n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XNR1_NATM8
ABC-type transport system periplasmic substrate-binding protein (probable substrate iron/cobalamin)
ABC-type transport system periplasmic substrate-binding protein (Probable substrate iron/cobalamin) {ECO:0000313|EMBL:CCQ35572.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacte
sw_5_scaffold_3250_5
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(2497..3282)
DNA (786bp) protein (262aa)
ABC-type transport system periplasmic substrate-binding protein (Probable substrate iron/cobalamin) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3IUQ7_NATPD
iron(III ABC transporter periplasmic substrate-binding protein ABC transporter periplasmic substrate-binding protein 2
ABC-type transport system periplasmic substrate-binding protein (Probable substrate iron/cobalamin) {ECO:0000313|EMBL:CAI48123.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacte
sw_5_scaffold_3250_6
Natrinema pellirubrum, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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3298..3453
DNA (156bp) protein (52aa)
Uncharacterized protein n=1 Tax=Natrinema pellirubrum (strain DSM 15624 / JCM 10476 / NCIMB 786) RepID=L0JU34_NATP1
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGB33901.1}; TaxID=797303 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema pellirubrum (strain DSM 1
sw_5_scaffold_3250_7
halophilic archaeon J07HX64, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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3937..5094
DNA (1158bp) protein (386aa)
Transposase, IS605 OrfB family, central region n=1 Tax=halophilic archaeon J07HX64 RepID=U1QX80_9EURY
Transposase, IS605 OrfB family, central region {ECO:0000313|EMBL:ERH10522.1}; TaxID=1085028 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales.;" source="halophilic archaeon J07HX64.;"
transposase, IS605 OrfB family, central region
sw_5_scaffold_3250_8
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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comp(5118..7001)
DNA (1884bp) protein (628aa)
PAS domain S-box n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CW77_9EURY
PAS domain S-box {ECO:0000313|EMBL:ELZ27481.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadense 2-9-1.;"
PAS domain-containing protein
sw_5_scaffold_3250_9
Haloterrigena turkmenica, Haloterrigena, Natrialbales, Halobacteria, Euryarchaeota, Archaea

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comp(6977..7420)
DNA (444bp) protein (148aa)
Response regulator receiver modulated GAF sensor protein n=1 Tax=Haloterrigena turkmenica (strain ATCC 51198 / DSM 5511 / NCIMB 13204 / VKM B-1734) RepID=D2RTI6_HALTV
response regulator receiver modulated GAF sensor protein
Response regulator receiver modulated GAF sensor protein {ECO:0000313|EMBL:ADB59029.1}; TaxID=543526 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Haloterrigena.;" source
sw_5_scaffold_3250_10
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(7560..8081)
DNA (522bp) protein (174aa)
Archaemetzincin {ECO:0000255|HAMAP-Rule:MF_01842}; EC=3.4.-.- {ECO:0000255|HAMAP-Rule:MF_01842};; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natrono
Archaemetzincin n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=AMZA_NATPD
archaemetzincin-like protein
sw_5_scaffold_3250_11
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

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8121..8510
DNA (390bp) protein (130aa)
UPF0146 family protein n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XMX4_NATM8
UPF0146 family protein
UPF0146 protein Nmlp_1018 {ECO:0000256|HAMAP-Rule:MF_00341}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolape
sw_5_scaffold_3250_12
Natronomonas moolapensis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8507..9376
DNA (870bp) protein (290aa)
HAD superfamily hydrolase n=1 Tax=Natronomonas moolapensis (strain DSM 18674 / JCM 14361 / 8.8.11) RepID=M1XK43_NATM8
HAD superfamily hydrolase
HAD superfamily hydrolase {ECO:0000313|EMBL:CCQ35231.1}; TaxID=268739 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas moolapensis
sw_5_scaffold_3250_13
unknown

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9373..9570
DNA (198bp) protein (66aa)

This feature has no annotations

sw_5_scaffold_3250_14
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9571..10032)
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITQ8_NATPD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:CAI48475.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Natronomonas.;" source="Natronomonas pharaonis (st
sw_5_scaffold_3250_15
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(10118..10918)
DNA (801bp) protein (267aa)
ABC-type transport system ATP-binding protein (Probable substrate dipeptide/oligopeptide/nickel) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITQ9_NATPD
abc01a_2; dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
ABC-type transport system ATP-binding protein (Probable substrate dipeptide/oligopeptide) {ECO:0000313|EMBL:CAI48474.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
sw_5_scaffold_3250_16
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(11360..12520)
DNA (1161bp) protein (387aa)
ABC-type transport system ATP-binding protein (Probable substrate dipeptide/oligopeptide/nickel) n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=Q3ITR0_NATPD
abc01a_1; dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein
ABC-type transport system ATP-binding protein (Probable substrate dipeptide/oligopeptide) {ECO:0000313|EMBL:CAI48473.1}; TaxID=348780 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Ha
sw_5_scaffold_3250_17

Not on your lists

comp(12521..12649)
DNA (129bp) protein (43aa)
ABC-type transporter, integral membrane subunit n=1 Tax=halophilic archaeon DL31 RepID=G2MFU7_9ARCH
ABC transporter
ABC-type transporter, integral membrane subunit {ECO:0000313|EMBL:AEN04496.1}; TaxID=756883 species="Archaea.;" source="halophilic archaeon DL31.;"
Displaying 17 items

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