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sw_5_scaffold_28

Search features with annotation key words

Displaying items 1-30 of 62 in total
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_28_1
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

3..392
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4WA82_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN02499.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.
sw_5_scaffold_28_2
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

431..679
DNA (249bp) protein (83aa)
Uncharacterized protein n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PGG4_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ERJ04613.1}; TaxID=1033806 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus tiamatea SARL4
sw_5_scaffold_28_3
Halosimplex carlsbadense, Halosimplex, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

676..1071
DNA (396bp) protein (132aa)
PilT protein domain protein n=1 Tax=Halosimplex carlsbadense 2-9-1 RepID=M0CDN5_9EURY
PilT protein domain protein {ECO:0000313|EMBL:ELZ19974.1}; TaxID=797114 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halosimplex.;" source="Halosimplex carlsbadens
PilT domain protein
sw_5_scaffold_28_4
Natronomonas pharaonis, Natronomonas, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(1099..2883)
DNA (1785bp) protein (595aa)
gatE; glutamyl-tRNA(Gln) amidotransferase subunit E (EC:6.3.5.-)
Glutamyl-tRNA(Gln) amidotransferase subunit E {ECO:0000255|HAMAP-Rule:MF_00588}; Short=Glu-ADT subunit E {ECO:0000255|HAMAP-Rule:MF_00588};; EC=6.3.5.- {ECO:0000255|HAMAP-Rule:MF_00588};; TaxID=348780
Glutamyl-tRNA(Gln) amidotransferase subunit E n=1 Tax=Natronomonas pharaonis (strain ATCC 35678 / DSM 2160) RepID=GATE_NATPD
sw_5_scaffold_28_5
Halobiforma lacisalsi, Halobiforma, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(2942..4024)
DNA (1083bp) protein (361aa)
Glycerol-1-phosphate dehydrogenase [NAD(P)+] n=1 Tax=Halobiforma lacisalsi AJ5 RepID=M0LWC6_9EURY
Glycerol-1-phosphate dehydrogenase [NAD(P)+] {ECO:0000256|HAMAP-Rule:MF_00497, ECO:0000256|SAAS:SAAS00015263}; Short=G1P dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00497};; Short=G1PDH {ECO:0000256|HAMA
3-dehydroquinate synthase
sw_5_scaffold_28_6
Advenella kashmirensis, Advenella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4406..5617
DNA (1212bp) protein (404aa)
Extracellular ligand-binding receptor n=1 Tax=Spiribacter salinus M19-40 RepID=R4V3G1_9GAMM
extracellular ligand-binding receptor
Branched-chain amino acid ABC transporter substrate-binding protein {ECO:0000313|EMBL:ETF02658.1}; TaxID=1424334 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae.
sw_5_scaffold_28_7
BJP_IG2158_Anaerolineales_38_74, Anaerolineales, Anaerolineae, Chloroflexi, Bacteria

Not on your lists

5627..6544
DNA (918bp) protein (306aa)
ABC-type transporter, integral membrane subunit n=1 Tax=Desulfovibrio sp. X2 RepID=S7U077_9DELT
inner-membrane translocator
Tax=BJP_IG2158_Anaerolineales_38_74
sw_5_scaffold_28_8
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6541..7620
DNA (1080bp) protein (360aa)
Branched-chain amino acid transport system permease protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NZ35_AZOS1
livH; branched-chain amino acid transport system permease protein
Branched-chain amino acid transport system permease protein {ECO:0000313|EMBL:BAI73664.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azo
sw_5_scaffold_28_9
R_NC10_66_22, NC10, Bacteria

Not on your lists

7617..8372
DNA (756bp) protein (252aa)
ABC transporter; K01995 branched-chain amino acid transport system ATP-binding protein Tax=RIFCSPLOWO2_02_FULL_NC10_66_22_curated
ABC-type branched-chain amino acid transport systems, ATPase component id=24650119 bin=uncultivated_archaeon_J07ABHX6 species=unknown genus=unknown taxon_order=Halobacteriales taxon_class=Halobacteria phylum=Euryarchaeota tax=uncultivated_archaeon_J07ABHX6
ABC-type branched-chain amino acid transport systems, ATPase component
sw_5_scaffold_28_10
Halorubrum arcis, Halorubrum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

8382..9107
DNA (726bp) protein (242aa)
ABC transporter n=1 Tax=Halorubrum hochstenium ATCC 700873 RepID=M0F2B1_9EURY
ABC transporter {ECO:0000313|EMBL:EMA71983.1}; TaxID=1230455 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Halorubrum.;" source="Halorubrum arcis JCM 13916.;"
ABC-type branched-chain amino acid transport systems, ATPase component
sw_5_scaffold_28_11
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(9109..10113)
DNA (1005bp) protein (335aa)
NAD-dependent epimerase/dehydratase n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8DCE6_HALXS
NAD-dependent epimerase/dehydratase
NAD-dependent epimerase/dehydratase {ECO:0000313|EMBL:AEH38406.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (
sw_5_scaffold_28_12
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists


comp(10339..11799)
DNA (1461bp) protein (487aa)
prolyl-tRNA ligase (EC:6.1.1.15)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=1333523 species="Archaea; Euryar
Proline--tRNA ligase n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4W022_9EURY
sw_5_scaffold_28_13
Candidatus Halobonum tyrrellensis, Candidatus Halobonum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

12151..14076
DNA (1926bp) protein (642aa)
KH-domain/beta-lactamase-domain-containing protein n=1 Tax=Candidatus Halobonum tyrrellensis G22 RepID=V4J0P3_9EURY
KH-domain/beta-lactamase-domain-containing protein {ECO:0000313|EMBL:ESP89042.1}; TaxID=1324957 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Candidatus Halobonum.;
mRNA 3'-end processing factor
sw_5_scaffold_28_14
unknown

Not on your lists

14073..14279
DNA (207bp) protein (69aa)

This feature has no annotations

sw_5_scaffold_28_15
unknown

Not on your lists

14331..14894
DNA (564bp) protein (188aa)

This feature has no annotations

sw_5_scaffold_28_16
Halorhabdus tiamatea, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(15071..15889)
DNA (819bp) protein (273aa)
endonuclease III (EC:4.2.99.18)
Endonuclease III {ECO:0000313|EMBL:CCQ34553.1}; EC=4.2.99.18 {ECO:0000313|EMBL:CCQ34553.1};; Endonuclease III protein {ECO:0000313|EMBL:ERJ06385.1}; EC=4.2.99.18 {ECO:0000313|EMBL:ERJ06385.1};; TaxID=
Endonuclease III n=1 Tax=Halorhabdus tiamatea SARL4B RepID=F7PM06_9EURY
sw_5_scaffold_28_17
Haloferax sp. ATCC BAA-645, Haloferax, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(16148..16705)
DNA (558bp) protein (186aa)
Uncharacterized protein n=3 Tax=Haloferax RepID=M0FI65_9EURY
Uncharacterized protein {ECO:0000313|EMBL:ELZ64783.1}; TaxID=1227463 species="Archaea; Euryarchaeota; Halobacteria; Haloferacales; Haloferacaceae; Haloferax.;" source="Haloferax sp. ATCC BAA-645.;"
hypothetical protein
sw_5_scaffold_28_18
Halopiger xanaduensis, Halopiger, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

17021..18172
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Halopiger xanaduensis (strain DSM 18323 / JCM 14033 / SH-6) RepID=F8D386_HALXS
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AEH38518.1}; TaxID=797210 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Halopiger.;" source="Halopiger xanaduensis (strain DSM 1
sw_5_scaffold_28_19
Natronobacterium gregoryi, Natronobacterium, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

18249..19217
DNA (969bp) protein (323aa)
Nucleoside-diphosphate-sugar pyrophosphorylase family protein n=1 Tax=Natronobacterium gregoryi (strain ATCC 43098 / CCM 3738 / NCIMB 2189 / SP2) RepID=L0AFE5_NATGS
Nucleoside-diphosphate-sugar pyrophosphorylase family protein
Nucleoside-diphosphate-sugar pyrophosphorylase family protein {ECO:0000313|EMBL:AFZ72149.1}; Nucleotidyl transferase {ECO:0000313|EMBL:ELY62887.1}; TaxID=797304 species="Archaea; Euryarchaeota; Haloba
sw_5_scaffold_28_20
Natronococcus jeotgali, Natronococcus, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

19270..20742
DNA (1473bp) protein (491aa)
D-aminoacyl-tRNA deacylase {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160314}; EC=3.1.1.96 {ECO:0000256|HAMAP-Rule:MF_00562, ECO:0000256|SAAS:SAAS00160312};; TaxID=1227498 species="Archa
D-tyrosyl-tRNA(Tyr) deacylase n=1 Tax=Natronococcus jeotgali DSM 18795 RepID=L9WQU9_9EURY
hypothetical protein
sw_5_scaffold_28_21
Natronorubrum sulfidifaciens, Natronorubrum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

20857..22056
DNA (1200bp) protein (400aa)
Cell division protein FtsZ n=1 Tax=Natronorubrum sulfidifaciens JCM 14089 RepID=L9W5W7_9EURY
Cell division protein FtsZ {ECO:0000256|HAMAP-Rule:MF_00909, ECO:0000256|RuleBase:RU003360}; TaxID=1230460 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natronorubrum.;"
cell division protein FtsZ
sw_5_scaffold_28_22
Natrinema sp. J7-2, Natrinema, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22110..22526)
DNA (417bp) protein (139aa)
Chorismate mutase n=2 Tax=Natrinema RepID=I7CGV7_NATSJ
chorismate mutase
Chorismate mutase {ECO:0000313|EMBL:AFO56779.1}; TaxID=406552 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Natrinema.;" source="Natrinema sp. (strain J7-2).;"
sw_5_scaffold_28_23
Halalkalicoccus jeotgali, Halalkalicoccus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(22523..23410)
DNA (888bp) protein (296aa)
shikimate kinase (EC:2.7.1.71)
Shikimate kinase {ECO:0000256|HAMAP-Rule:MF_00370}; Short=SK {ECO:0000256|HAMAP-Rule:MF_00370};; EC=2.7.1.71 {ECO:0000256|HAMAP-Rule:MF_00370};; TaxID=795797 species="Archaea; Euryarchaeota; Halobacte
Shikimate kinase n=1 Tax=Halalkalicoccus jeotgali (strain DSM 18796 / CECT 7217 / JCM 14584 / KCTC 4019 / B3) RepID=D8J3F2_HALJB
sw_5_scaffold_28_24
Halococcus salifodinae, Halococcus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

23512..24447
DNA (936bp) protein (312aa)
Uncharacterized protein n=1 Tax=Halococcus salifodinae DSM 8989 RepID=M0N5X7_9EURY
Hypothetical Protein
Uncharacterized protein {ECO:0000313|EMBL:EMA52499.1}; TaxID=1227456 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halococcus.;" source="Halococcus salifodinae DSM
sw_5_scaffold_28_25
Halorhabdus utahensis, Halorhabdus, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

24556..25881
DNA (1326bp) protein (442aa)
Uncharacterized protein n=1 Tax=Halorhabdus utahensis (strain DSM 12940 / JCM 11049 / AX-2) RepID=C7NPE9_HALUD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACV11736.1}; TaxID=519442 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halorhabdus.;" source="Halorhabdus utahensis (stra
sw_5_scaffold_28_26
Salinarchaeum sp. Harcht-Bsk1, Salinarchaeum, Natrialbales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(25885..26127)
DNA (243bp) protein (81aa)
Uncharacterized protein n=1 Tax=Salinarchaeum sp. Harcht-Bsk1 RepID=R4VVH8_9EURY
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGN00251.1}; TaxID=1333523 species="Archaea; Euryarchaeota; Halobacteria; Natrialbales; Natrialbaceae; Salinarchaeum.;" source="Salinarchaeum sp. Harcht-Bsk1.
sw_5_scaffold_28_27
Haloarcula marismortui, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(26127..26612)
DNA (486bp) protein (162aa)
Uncharacterized protein n=1 Tax=Haloarcula marismortui (strain ATCC 43049 / DSM 3752 / JCM 8966 / VKM B-1809) RepID=Q5V3W1_HALMA
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AAV45791.1}; TaxID=272569 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula marismortui (stra
sw_5_scaffold_28_28
Halanaeroarchaeum sulfurireducens, Halanaeroarchaeum, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(26634..27119)
DNA (486bp) protein (162aa)
Reca-superfamily ATPase possibly involved in signal transduction n=1 Tax=Halosarcina pallida JCM 14848 RepID=M0DIH5_9EURY
Uncharacterized protein {ECO:0000313|EMBL:AKH98068.1}; TaxID=1604004 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Halanaeroarchaeum.;" source="Halanaeroarchaeum su
hypothetical protein
sw_5_scaffold_28_29
unknown

Not on your lists

comp(27116..27274)
DNA (159bp) protein (53aa)

This feature has no annotations

sw_5_scaffold_28_30
Haloarcula argentinensis, Haloarcula, Halobacteriales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(27333..28073)
DNA (741bp) protein (247aa)
Putative sensor protein n=1 Tax=Haloarcula argentinensis DSM 12282 RepID=M0KEY2_HALAR
Putative sensor protein {ECO:0000313|EMBL:EMA18744.1}; TaxID=1230451 species="Archaea; Euryarchaeota; Halobacteria; Halobacteriales; Halobacteriaceae; Haloarcula.;" source="Haloarcula argentinensis DS
histidine kinase
Displaying items 1-30 of 62 in total

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