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sw_5_scaffold_2042

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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_5_scaffold_2042_1
Ochromonas sp. CCMP1393, Ochromonas, Chromulinales, Chrysophyceae, Eukaryota

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1..549
DNA (549bp) protein (183aa)
Cytochrome c biogenesis protein CcsA n=1 Tax=Cyanophora paradoxa RepID=CCSA_CYAPA
Cytochrome c biogenesis protein CcsA {ECO:0000256|HAMAP-Rule:MF_01391}; TaxID=420556 species="Eukaryota; Stramenopiles; Chrysophyceae; Chromulinales; Chromulinaceae; Ochromonas.;" source="Ochromonas s
cytochrome C assembly protein
sw_5_scaffold_2042_2
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

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618..1208
DNA (591bp) protein (197aa)
ATP-dependent Clp protease proteolytic subunit {ECO:0000256|HAMAP-Rule:MF_00444, ECO:0000256|RuleBase:RU003567}; EC=3.4.21.92 {ECO:0000256|HAMAP-Rule:MF_00444};; Endopeptidase Clp {ECO:0000256|HAMAP-R
protease subunit of ATP-dependent protease (EC:3.4.21.92)
ATP-dependent Clp protease proteolytic subunit n=1 Tax=Pyramimonas parkeae RepID=C0JWZ4_9CHLO
sw_5_scaffold_2042_3
Pyramimonas parkeae, Pyramimonas, Pyramimonadales, Chlorophyta, Viridiplantae

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1361..2887
DNA (1527bp) protein (509aa)
Photosystem II CP47 chlorophyll apoprotein n=1 Tax=Pyramimonas parkeae RepID=C0JWZ3_9CHLO
Photosystem II CP47 reaction center protein {ECO:0000256|HAMAP-Rule:MF_01495, ECO:0000256|RuleBase:RU004535}; PSII 47 kDa protein {ECO:0000256|HAMAP-Rule:MF_01495}; Protein CP-47 {ECO:0000256|HAMAP-Ru
photosystem II chlorophyll-binding protein CP47
sw_5_scaffold_2042_4
Volvox carteri, Volvox, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

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2903..2998
DNA (96bp) protein (32aa)
Photosystem II reaction center protein T {ECO:0000256|HAMAP-Rule:MF_00808}; Short=PSII-T {ECO:0000256|HAMAP-Rule:MF_00808};; TaxID=3068 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; C
sw_5_scaffold_2042_5
Stigeoclonium helveticum, Stigeoclonium, Chaetophorales, Chlorophyceae, Chlorophyta, Viridiplantae

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3019..3153
DNA (135bp) protein (45aa)
Protein PsbN n=1 Tax=Stigeoclonium helveticum RepID=PSBN_STIHE
Protein PsbN {ECO:0000255|HAMAP-Rule:MF_00293}; TaxID=55999 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chaetophorales; Chaetophorales incertae sedis; Stigeoclonium.;" source="Stige
psbN; photosystem II protein N; K02715 PsbN protein
sw_5_scaffold_2042_6
Pedinomonas minor, Pedinomonas, Pedinomonadales, Pedinophyceae, Chlorophyta, Viridiplantae

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3166..3396
DNA (231bp) protein (77aa)
Photosystem II reaction center protein H n=1 Tax=Pedinomonas minor RepID=C7BEL3_PEDMN
Photosystem II reaction center protein H {ECO:0000256|HAMAP-Rule:MF_00752}; Short=PSII-H {ECO:0000256|HAMAP-Rule:MF_00752};; TaxID=3159 species="Eukaryota; Viridiplantae; Chlorophyta; Pedinophyceae; P
psbH; photosystem II reaction center protein H
sw_5_scaffold_2042_trna_1
unknown

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3524..3610
DNA (87bp)
transferRNA
sw_5_scaffold_2042_trna_2
unknown

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3697..3770
DNA (74bp)
transferRNA
sw_5_scaffold_2042_trna_3
unknown

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3803..3874
DNA (72bp)
transferRNA
sw_5_scaffold_2042_7
Ettlia pseudoalveolaris, Ettlia, Chlamydomonadales, Chlorophyceae, Chlorophyta, Viridiplantae

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4031..4969
DNA (939bp) protein (313aa)
Apocytochrome f n=1 Tax=Parachlorella kessleri RepID=C7BEY8_PARKE
Cytochrome f {ECO:0000256|HAMAP-Rule:MF_00610}; Flags: Precursor;; TaxID=3102 species="Eukaryota; Viridiplantae; Chlorophyta; Chlorophyceae; Chlamydomonadales; Chlamydomonadales incertae sedis; Ettlia
apocytochrome f
sw_5_scaffold_2042_8
Ostreococcus tauri, Ostreococcus, Mamiellales, Mamiellophyceae, Chlorophyta, Viridiplantae

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5373..6728
DNA (1356bp) protein (452aa)
DNA-directed RNA polymerase subunit beta''; EC=2.7.7.6;; PEP; Plastid-encoded RNA polymerase subunit beta''; Short=RNA polymerase subunit beta'';; TaxID=70448 species="Eukaryota; Viridiplantae; Chloro
DNA-directed RNA polymerase subunit beta' (EC:2.7.7.6)
DNA-directed RNA polymerase subunit beta'' n=2 Tax=Ostreococcus tauri RepID=RPOC2_OSTTA
sw_5_scaffold_2042_9
unknown

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6688..7095
DNA (408bp) protein (136aa)

This feature has no annotations

Displaying 12 items

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