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sw_6_scaffold_1326

Search features with annotation key words

Displaying 20 items
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*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_1326_1
RHI_RIF_OD1_10_44_12b, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(3..878)
DNA (876bp) protein (292aa)
serine-type D-Ala-D-Ala carboxypeptidase (EC:3.4.16.4); K07258 D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5/6) [EC:3.4.16.4] id=5803556 bin=OD1_GWC2_34_28 species=ACD63 genus=ACD63 taxon_order=ACD63 taxon_class=ACD63 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
D-alanyl-D-alanine carboxypeptidase Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_10_44_12b_curated
D-alanyl-D-alanine carboxypeptidase
sw_6_scaffold_1326_2
R_OD1_Kaiserbacteria_51_21, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(881..1429)
DNA (549bp) protein (183aa)
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B Tax=RIFCSPLOWO2_01_FULL_OD1_Kaiserbacteria_51_21_curated
scpB; segregation and condensation protein B; K06024 segregation and condensation protein B id=5803557 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
scpB; segregation and condensation protein B
sw_6_scaffold_1326_3
R_OD1_Kaiserbacteria_55_17, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(1422..2012)
DNA (591bp) protein (197aa)
scpA; segregation and condensation protein A; K05896 segregation and condensation protein A Tax=RIFCSPHIGHO2_01_FULL_OD1_Kaiserbacteria_55_17_curated
Segregation and condensation protein A id=2949313 bin=GWC1_CPR2_39_9 species=Chthoniobacter flavus genus=Chthoniobacter taxon_order=unknown taxon_class=Spartobacteria phylum=Verrucomicrobia tax=GWC1_CPR2_39_9 organism_group=CPR2 organism_desc=Good
sw_6_scaffold_1326_4
unknown

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comp(3722..4339)
DNA (618bp) protein (206aa)

This feature has no annotations

sw_6_scaffold_1326_5
RHI_RIF_OD1_11_45_16, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(4419..6200)
DNA (1782bp) protein (594aa)
Uncharacterized protein n=1 Tax=uncultured bacterium RepID=K2FGV3_9BACT
multidrug ABC transporter ATPase/permease Tax=RIFCSPHIGHO2_12_FULL_RIF_OD1_11_45_16_curated
ABC-type multidrug transport system, ATPase and permease component
sw_6_scaffold_1326_6
Clostridium acetobutylicum, Clostridium, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6184..6729)
DNA (546bp) protein (182aa)
Diverged enzyme n=3 Tax=Clostridium acetobutylicum RepID=F0K4N7_CLOAE
Phosphoesterase HXTX
Diverged enzyme related to 2'-5' RNA ligase, ortholog YJCG B.subtilis {ECO:0000313|EMBL:AAK79570.1}; TaxID=272562 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Clostridiaceae; Clostridium.
sw_6_scaffold_1326_7
Firmicutes bacterium CAG:822, Firmicutes, Bacteria

Not on your lists

comp(6752..7201)
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Firmicutes bacterium CAG:822 RepID=R5J379_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:CCY47024.1}; TaxID=1263032 species="Bacteria; Firmicutes; environmental samples.;" source="Firmicutes bacterium CAG:822.;"
hypothetical protein
sw_6_scaffold_1326_8
GWF1_OD1_34_20, Nomurabacteria, Parcubacteria, Bacteria

Not on your lists

comp(7225..7806)
DNA (582bp) protein (194aa)
Putative uncharacterized protein n=1 Tax=Ktedonobacter racemifer DSM 44963 RepID=D6TTE2_9CHLR id=84712 bin=ACD56 species=Ktedonobacter racemifer genus=Ktedonobacter taxon_order=Ktedonobacterales taxon_class=Ktedonobacteria phylum=Chloroflexi tax=ACD56 organism_group=OD1-i organism_desc=OD1-i
Uncharacterized protein {ECO:0000313|EMBL:KKP61295.1}; TaxID=1618768 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Nomurabacteria) bacterium GW2011_GWF1_34_20.;"
hypothetical protein
sw_6_scaffold_1326_9
GWD2_Clostridiales_32_59_curated, Clostridiales, Bacteria

Not on your lists


comp(7809..8390)
DNA (582bp) protein (194aa)
queA; S-adenosylmethionine:tRNA ribosyltransferase-isomerase (EC:5.-.-.-); K07568 S-adenosylmethionine:tRNA ribosyltransferase-isomerase [EC:5.-.-.-] Tax=GWD2_Clostridiales_32_59_curated
putative Non-canonical purine NTP pyrophosphatase (EC:3.6.1.19)
S-adenosylmethionine:tRNA ribosyltransferase-isomerase id=1997498 bin=GWD2_Clostridiales_32_59 species=Caloramator australicus genus=Caloramator taxon_order=Clostridiales taxon_class=Clostridia phylum=Firmicutes tax=GWD2_Clostridiales_32_59 organism_group=Firmicute organism_desc=a65
sw_6_scaffold_1326_10
R_RIF_OD1_10_43_60, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(8393..8551)
DNA (159bp) protein (53aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_43_60_curated
sw_6_scaffold_1326_11
R_RIF_OD1_10_49_18, RIF-OD1-1, Parcubacteria, Bacteria

Not on your lists

comp(8535..9437)
DNA (903bp) protein (301aa)
tryptophanyl-tRNA synthetase; K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] Tax=RIFCSPHIGHO2_01_FULL_RIF_OD1_10_49_18_curated
tryptophanyl-tRNA synthetase (EC:6.1.1.2); K01867 tryptophanyl-tRNA synthetase [EC:6.1.1.2] id=5803417 bin=OD1_GWC2_34_28 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
TrpS; tryptophanyl-tRNA synthetase (EC:6.1.1.2)
sw_6_scaffold_1326_trna_3
unknown

Not on your lists

comp(9440..9521)
DNA (82bp)
transferRNA
sw_6_scaffold_1326_trna_2
unknown

Not on your lists

comp(9572..9643)
DNA (72bp)
transferRNA
sw_6_scaffold_1326_12
unknown

Not on your lists

comp(9836..10018)
DNA (183bp) protein (61aa)

This feature has no annotations

sw_6_scaffold_1326_trna_1
unknown

Not on your lists

comp(10560..10632)
DNA (73bp)
transferRNA
sw_6_scaffold_1326_13
Parcubacteria bacterium GW2011_GWE2_37_8, Parcubacteria, Bacteria

Not on your lists


comp(11168..11896)
DNA (729bp) protein (243aa)
glyS; glycyl-tRNA synthetase (EC:6.1.1.14)
Glycine--tRNA ligase id=2824158 bin=GWC1_OD1_38_17 species=ACD38 genus=ACD38 taxon_order=ACD38 taxon_class=ACD38 phylum=OP11 tax=GWC1_OD1_38_17 organism_group=OD1 (Parcubacteria) organism_desc=Good + Candidate for curation
Glycine-tRNA ligase {ECO:0000313|EMBL:KKQ43760.1}; TaxID=1618948 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWE2_37_8.;"
sw_6_scaffold_1326_14
RifOxyC12_full_RIF_OD1_09_46_25_curated, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(11886..12578)
DNA (693bp) protein (231aa)
glycyl-tRNA synthetase; K01880 glycyl-tRNA synthetase [EC:6.1.1.14] Tax=RifOxyC12_full_RIF_OD1_09_46_25_curated
glycyl-tRNA synthetase (EC:6.1.1.14)
Suspect SCG annotation. See neighboring gene [sw_6_scaffold_1326_13].
glycyl-tRNA synthetase id=3673468 bin=GWC2_TM7_48_9 species=candidate division TM7 single-cell isolate TM7c genus=unknown taxon_order=unknown taxon_class=unknown phylum=Candidatus Saccharibacteria tax=GWC2_TM7_48_9 organism_group=TM7 organism_desc=Good
sw_6_scaffold_1326_15
R_RIF_OD1_09_51_11, RIF-OD1-9, Parcubacteria, Bacteria

Not on your lists

comp(12722..14311)
DNA (1590bp) protein (530aa)
putative histidine kinase (EC:2.7.13.3) Tax=RIFCSPLOWO2_02_FULL_RIF_OD1_09_51_11_curated
PAS/PAC sensor signal transduction histidine kinase (EC:2.7.3.-); K00936 [EC:2.7.3.-] id=5803553 bin=OD1_GWC2_34_28 species=ACD18 genus=ACD18 taxon_order=ACD18 taxon_class=ACD18 phylum=OD1 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
PAS domain S-box
sw_6_scaffold_1326_16
GWA2_OD1_38_13, Parcubacteria, Bacteria

Not on your lists

comp(14364..15329)
DNA (966bp) protein (322aa)
Uncharacterized protein {ECO:0000313|EMBL:KKQ54775.1}; TaxID=1618811 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_38_13.;"
Putative uncharacterized protein id=15188922 bin=GWE1_Berkelbacteria_39_12 species=ACD58_39_12 genus=ACD58_39_12 taxon_order=ACD58_39_12 taxon_class=ACD58_39_12 phylum=ACD58 tax=GWE1_Berkelbacteria_39_12 organism_group=ACD58 (Berkelbacteria) organism_desc=Complete genome (ACD58 lineage)
sw_6_scaffold_1326_17
RHI_OD1_Kaiserbacteria_53_13, Kaiserbacteria, Parcubacteria, Bacteria

Not on your lists

comp(15447..16538)
DNA (1092bp) protein (364aa)
chaperone protein DnaJ; K03686 molecular chaperone DnaJ Tax=RIFCSPHIGHO2_12_FULL_OD1_Kaiserbacteria_53_13_curated
id=5227091 bin=RAAC4_OD1 species=RAAC4_OD1 genus=RAAC4_OD1 taxon_order=RAAC4_OD1 taxon_class=RAAC4_OD1 phylum=OD1 tax=RAAC4_OD1 organism_group=OD1 (Parcubacteria)
dnaJ; chaperone protein
Displaying 20 items

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