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sw_6_scaffold_273

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
sw_6_scaffold_273_1
Dictyostelium discoideum, Dictyostelium, Dictyosteliida, Eukaryota

Not on your lists

comp(3..1556)
DNA (1554bp) protein (518aa)
Uncharacterized protein DDB_G0290301 n=1 Tax=Dictyostelium discoideum RepID=Y8826_DICDI
Uncharacterized protein DDB_G0290301; TaxID=44689 species="Eukaryota; Amoebozoa; Mycetozoa; Dictyosteliida; Dictyostelium.;" source="Dictyostelium discoideum (Slime mold).;"
Microtubule/TRAF3 and DISC1 binding protein
sw_6_scaffold_273_2
unknown

Not on your lists

comp(2196..2384)
DNA (189bp) protein (63aa)

This feature has no annotations

sw_6_scaffold_273_trna_2
unknown

Not on your lists

comp(2490..2561)
DNA (72bp)
transferRNA
sw_6_scaffold_273_3
RLO_RIF_OD1_11_43_20, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

2781..3092
DNA (312bp) protein (104aa)
YGGT family protein Tax=RIFCSPLOWO2_12_FULL_RIF_OD1_11_43_20_curated
hypothetical protein id=5099330 bin=WS6_GWF2_39_15 species=WS6_CLOSED genus=WS6_CLOSED taxon_order=WS6_CLOSED taxon_class=WS6_CLOSED phylum=WS6 tax=WS6_GWF2_39_15 organism_group=WS6 (Doikabacteria) organism_desc=replace with complete version
hypothetical protein
sw_6_scaffold_273_4
unknown

Not on your lists

3483..4394
DNA (912bp) protein (304aa)

This feature has no annotations

sw_6_scaffold_273_trna_1
unknown

Not on your lists

comp(4808..4882)
DNA (75bp)
transferRNA
sw_6_scaffold_273_5
unknown

Not on your lists

comp(5314..6033)
DNA (720bp) protein (240aa)

This feature has no annotations

sw_6_scaffold_273_16S_1
unknown

Not on your lists

comp(6554..8912)
DNA (2359bp)
sw_6_scaffold_273_6
R_RIF_OD1_11_45_15b, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

comp(8426..8887)
DNA (462bp) protein (154aa)
Intervening sequence n=1 Tax=Desmospora sp. 8437 RepID=F5SLP9_9BACL
hypothetical protein Tax=RIFCSPLOWO2_01_FULL_RIF_OD1_11_45_15b_curated
S23 ribosomal protein
Bac Arch 16s rRNA! Kari Finstad (2/6/15)
sw_6_scaffold_273_7
Trichomonas vaginalis, Trichomonas, Trichomonadida, Eukaryota

Not on your lists

comp(9489..10469)
DNA (981bp) protein (327aa)
Trichohyalin, putative n=1 Tax=Trichomonas vaginalis RepID=A2FHD4_TRIVA
trichohyalin
Trichohyalin, putative {ECO:0000313|EMBL:EAX95692.1}; TaxID=5722 species="Eukaryota; Parabasalia; Trichomonadida; Trichomonadidae; Trichomonas.;" source="Trichomonas vaginalis.;"
sw_6_scaffold_273_8
unknown

Not on your lists

comp(10534..10638)
DNA (105bp) protein (35aa)

This feature has no annotations

sw_6_scaffold_273_9
RLO_OD1_Giovannonibacteria_44_32, Giovannonibacteria, Parcubacteria, Bacteria

Not on your lists

comp(10710..10967)
DNA (258bp) protein (86aa)
hypothetical protein n=1 Tax=Parcubacteria bacterium SCGC AAA010-E09 RepID=UPI000373B1FF
addiction module toxin, RelE/StbE family Tax=RIFCSPLOWO2_12_FULL_OD1_Giovannonibacteria_44_32_curated
plasmid stabilization system-related protein
sw_6_scaffold_273_10
unknown

Not on your lists

comp(10970..11185)
DNA (216bp) protein (72aa)

This feature has no annotations

sw_6_scaffold_273_11
unknown

Not on your lists

comp(11307..11465)
DNA (159bp) protein (53aa)

This feature has no annotations

sw_6_scaffold_273_12
R_RIF_OD1_11_43_32b, RIF-OD1-11, Parcubacteria, Bacteria

Not on your lists

11612..12364
DNA (753bp) protein (251aa)
putative divalent heavy-metal cations transporter Tax=RIFCSPHIGHO2_02_FULL_RIF_OD1_11_43_32b_curated
zinc/iron permease id=5803669 bin=OD1_GWC2_34_28 species=ACD37 genus=ACD37 taxon_order=ACD37 taxon_class=ACD37 phylum=OP11 tax=OD1_GWC2_34_28 organism_group=OD1 (Parcubacteria) organism_desc=Complete genome
zupT; Zinc/Iron permease
sw_6_scaffold_273_13
GWA2_OD1_39_41, Moranbacteria, Parcubacteria, Bacteria

Not on your lists

12647..12859
DNA (213bp) protein (71aa)
Putative cold shock protein scoF n=1 Tax=uncultured bacterium RepID=K2F0D6_9BACT
Cold shock-like protein {ECO:0000313|EMBL:KKR20851.1}; TaxID=1618695 species="Bacteria; Parcubacteria.;" source="Parcubacteria (Moranbacteria) bacterium GW2011_GWA2_39_41.;"
cold shock DNA/RNA-binding protein
sw_6_scaffold_273_14
Halogeometricum borinquense, Halogeometricum, Haloferacales, Halobacteria, Euryarchaeota, Archaea

Not on your lists

comp(12931..13176)
DNA (246bp) protein (82aa)
Endonuclease containing a uri domain n=1 Tax=Halogeometricum borinquense (strain ATCC 700274 / DSM 11551 / JCM 10706 / PR3) RepID=E4NRI8_HALBP
endonuclease containing a uri domain
Endonuclease containing a uri domain {ECO:0000313|EMBL:ELY26994.1}; Predicted endonuclease containing a URI domain {ECO:0000313|EMBL:ADQ65664.1}; TaxID=469382 species="Archaea; Euryarchaeota; Halobact
sw_6_scaffold_273_15
[Bacillus] selenitireducens, Bacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(13181..13744)
DNA (564bp) protein (188aa)
peptide methionine sulfoxide reductase (EC:1.8.4.11)
Peptide methionine sulfoxide reductase MsrA {ECO:0000256|HAMAP-Rule:MF_01401}; Short=Protein-methionine-S-oxide reductase {ECO:0000256|HAMAP-Rule:MF_01401};; EC=1.8.4.11 {ECO:0000256|HAMAP-Rule:MF_014
Peptide methionine sulfoxide reductase MsrA n=1 Tax=Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) RepID=D6XUR8_BACIE
sw_6_scaffold_273_16
unknown

Not on your lists

comp(13871..14287)
DNA (417bp) protein (139aa)

This feature has no annotations

sw_6_scaffold_273_17
RHI_TM6_32_22, TM6, Bacteria

Not on your lists

comp(14355..14849)
DNA (495bp) protein (165aa)
heavy metal transporter n=1 Tax=Pedobacter agri RepID=UPI00029A7A11
hypothetical protein Tax=RIFCSPHIGHO2_12_FULL_TM6_32_22_curated
copZ; putative transmembrane heavy metal transport (copper)/detoxification protein
sw_6_scaffold_273_18
unknown

Not on your lists

comp(14905..15420)
DNA (516bp) protein (172aa)

This feature has no annotations

sw_6_scaffold_273_19

Not on your lists

comp(15602..16663)
DNA (1062bp) protein (354aa)
Uncharacterized protein {ECO:0000313|EMBL:KKO02777.1}; TaxID=412755 species="unclassified sequences; metagenomes; ecological metagenomes.;" source="marine sediment metagenome.;"
peptidoglycan binding domain-containing protein id=133463 bin=ACD81 species=ACD81 genus=ACD81 taxon_order=ACD81 taxon_class=ACD81 phylum=OD1 tax=ACD81 organism_group=OD1 (Parcubacteria) organism_desc=OD1
sw_6_scaffold_273_20
Hassallia byssoidea, Hassallia, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(16740..18305)
DNA (1566bp) protein (522aa)
hypothetical protein n=1 Tax=Balneola vulgaris RepID=UPI00036DFEBA
Deoxyribodipyrimidine photolyase {ECO:0000313|EMBL:KIF32384.1}; TaxID=1304833 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Hassallia.;" source="Hassallia byssoidea VB512170.;"
deoxyribodipyrimidine photolyase-like protein
sw_6_scaffold_273_21
Isosphaera pallida, Isosphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(18312..19757)
DNA (1446bp) protein (482aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA300-K03 RepID=UPI000379C412
DNA photolyase FAD-binding protein
DNA photolyase FAD-binding protein {ECO:0000313|EMBL:ADV63857.1}; TaxID=575540 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Isosphaera.;" source="Isosphaera
Displaying 24 items

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